L1ME4c_3end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000305 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Eutheria |
| Length | 830 |
| Kimura value | 31.34 |
| Tau index | 0.7823 |
| Description | 3' end of L1 retrotransposon, L1ME4c_3end subfamily |
| Comment | - |
| Sequence |
TTAATATCTNTANTATATAAAGAGCTCATTCAAATTGATAAGAAAAANATCAAGACCCCAATAGATAAATGGGCAAAGGACATGAACAGACAATTCACANAAGAGGAAATACAANTAGTAAACAAACACATGGAAAAATGTTCAACCTCGCTAGTAATCAAAGAAATGCAAATTAAAGCAACAATGAGATACCATTTTACGCCTATTAAATTAGCAAAAATTTAAAAAATTGATAATACCCAATGCTGGCGAGGNTGCGGTGAAACTGGTACNCTCATACATTGCTGGTGGCANTGTAAATTGGTACAACCCTTTTGGAAAGCAATTTGGCAATACGTATCAAGAGCCATAAAAATGTTCATACCCTTTGACCCAGTAATTCCACTTCTGGGAATTTATCCTAAGGAAATAATTCAAAAGAAGGAAAAAGCTATATGCACGAAGATGTTCATTGCAGCGTTATTTATAATAGCGAAAAATTGGAAACAACCTAAATGTCCAACAATAGGGGAATGGTTAAGTAAATTATGGTACATCNACTCGATGGAATATTATGCAGCCATTAAAAATGATAATTATGAAGACTATGTAGCAACATGGAAAATGTTTATGATATAATGTTAAGTGAAAAAAGCAGAATACAAAATTGTATNTACGCTATGATTACAACTATGTAAAAATTACGTATGCATATGGACAAGGACTGGAAGGGAACACGNAAAAATGAAAACAGTTGATTTGTTAGGGTGGTGGGATTATGGGTGANTTTTTCTTCTTTTTNAAAATTTTCTTTAATGTTGTTATAATGTTGTTTGTGCAATAAATAAAAA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1ME4c_3end | AT4G12670 | 597 | 625 | - | -17.65 | CTTAACATTATATCATAAACATTTTCCAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
