L1ME4c_3end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000305 |
|---|---|
| TE superfamily | L1 |
| TE order | LINE |
| Species | Eutheria |
| Length | 830 |
| Kimura value | 31.34 |
| Tau index | 0.7823 |
| Description | 3' end of L1 retrotransposon, L1ME4c_3end subfamily |
| Comment | - |
| Sequence |
TTAATATCTNTANTATATAAAGAGCTCATTCAAATTGATAAGAAAAANATCAAGACCCCAATAGATAAATGGGCAAAGGACATGAACAGACAATTCACANAAGAGGAAATACAANTAGTAAACAAACACATGGAAAAATGTTCAACCTCGCTAGTAATCAAAGAAATGCAAATTAAAGCAACAATGAGATACCATTTTACGCCTATTAAATTAGCAAAAATTTAAAAAATTGATAATACCCAATGCTGGCGAGGNTGCGGTGAAACTGGTACNCTCATACATTGCTGGTGGCANTGTAAATTGGTACAACCCTTTTGGAAAGCAATTTGGCAATACGTATCAAGAGCCATAAAAATGTTCATACCCTTTGACCCAGTAATTCCACTTCTGGGAATTTATCCTAAGGAAATAATTCAAAAGAAGGAAAAAGCTATATGCACGAAGATGTTCATTGCAGCGTTATTTATAATAGCGAAAAATTGGAAACAACCTAAATGTCCAACAATAGGGGAATGGTTAAGTAAATTATGGTACATCNACTCGATGGAATATTATGCAGCCATTAAAAATGATAATTATGAAGACTATGTAGCAACATGGAAAATGTTTATGATATAATGTTAAGTGAAAAAAGCAGAATACAAAATTGTATNTACGCTATGATTACAACTATGTAAAAATTACGTATGCATATGGACAAGGACTGGAAGGGAACACGNAAAAATGAAAACAGTTGATTTGTTAGGGTGGTGGGATTATGGGTGANTTTTTCTTCTTTTTNAAAATTTTCTTTAATGTTGTTATAATGTTGTTTGTGCAATAAATAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1ME4c_3end | CDX4 | 346 | 354 | + | 15.02 | GCCATAAAA |
| L1ME4c_3end | Nr2f6 | 362 | 374 | - | 14.99 | GGGTCAAAGGGTA |
| L1ME4c_3end | CHES-1-like | 117 | 126 | + | 14.87 | AGTAAACAAA |
| L1ME4c_3end | Pparg::Rxra | 362 | 374 | - | 14.86 | GGGTCAAAGGGTA |
| L1ME4c_3end | DOF3.2 | 418 | 433 | - | 14.77 | TAGCTTTTTCCTTCTT |
| L1ME4c_3end | POU3F2 | 164 | 175 | + | 14.58 | AAATGCAAATTA |
| L1ME4c_3end | elt-3 | 36 | 43 | - | 14.52 | TCTTATCA |
| L1ME4c_3end | blmp-1 | 720 | 730 | + | 14.51 | AAAAATGAAAA |
| L1ME4c_3end | CEBPD | 813 | 820 | - | 14.47 | TTGCACAA |
| L1ME4c_3end | FOXP2 | 117 | 125 | + | 14.35 | AGTAAACAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
