L1ME4c_3end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000305 |
|---|---|
| TE superfamily | L1 |
| TE order | LINE |
| Species | Eutheria |
| Length | 830 |
| Kimura value | 31.34 |
| Tau index | 0.7823 |
| Description | 3' end of L1 retrotransposon, L1ME4c_3end subfamily |
| Comment | - |
| Sequence |
TTAATATCTNTANTATATAAAGAGCTCATTCAAATTGATAAGAAAAANATCAAGACCCCAATAGATAAATGGGCAAAGGACATGAACAGACAATTCACANAAGAGGAAATACAANTAGTAAACAAACACATGGAAAAATGTTCAACCTCGCTAGTAATCAAAGAAATGCAAATTAAAGCAACAATGAGATACCATTTTACGCCTATTAAATTAGCAAAAATTTAAAAAATTGATAATACCCAATGCTGGCGAGGNTGCGGTGAAACTGGTACNCTCATACATTGCTGGTGGCANTGTAAATTGGTACAACCCTTTTGGAAAGCAATTTGGCAATACGTATCAAGAGCCATAAAAATGTTCATACCCTTTGACCCAGTAATTCCACTTCTGGGAATTTATCCTAAGGAAATAATTCAAAAGAAGGAAAAAGCTATATGCACGAAGATGTTCATTGCAGCGTTATTTATAATAGCGAAAAATTGGAAACAACCTAAATGTCCAACAATAGGGGAATGGTTAAGTAAATTATGGTACATCNACTCGATGGAATATTATGCAGCCATTAAAAATGATAATTATGAAGACTATGTAGCAACATGGAAAATGTTTATGATATAATGTTAAGTGAAAAAAGCAGAATACAAAATTGTATNTACGCTATGATTACAACTATGTAAAAATTACGTATGCATATGGACAAGGACTGGAAGGGAACACGNAAAAATGAAAACAGTTGATTTGTTAGGGTGGTGGGATTATGGGTGANTTTTTCTTCTTTTTNAAAATTTTCTTTAATGTTGTTATAATGTTGTTTGTGCAATAAATAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1ME4c_3end | DOF5.1 | 629 | 647 | + | 15.52 | AAAAAGCAGAATACAAAAT |
| L1ME4c_3end | RXRA::VDR | 360 | 374 | - | 15.30 | GGGTCAAAGGGTATG |
| L1ME4c_3end | Kr | 307 | 315 | + | 15.21 | CAACCCTTT |
| L1ME4c_3end | STAT3 | 386 | 394 | + | 15.20 | TTCTGGGAA |
| L1ME4c_3end | DOF5.8 | 629 | 647 | - | 15.20 | ATTTTGTATTCTGCTTTTT |
| L1ME4c_3end | FOXN3 | 118 | 125 | + | 15.19 | GTAAACAA |
| L1ME4c_3end | STAT1 | 386 | 394 | + | 15.13 | TTCTGGGAA |
| L1ME4c_3end | Stat5a::Stat5b | 386 | 394 | - | 15.12 | TTCCCAGAA |
| L1ME4c_3end | br | 116 | 126 | + | 15.10 | TAGTAAACAAA |
| L1ME4c_3end | Foxj3 | 118 | 126 | + | 15.06 | GTAAACAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
