L1ME2_3end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000294 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Eutheria |
| Length | 911 |
| Kimura value | 25.48 |
| Tau index | 0.8717 |
| Description | 3' end of L1 retrotransposon, L1ME2_3end subfamily |
| Comment | - |
| Sequence |
CTTGTATCCAGAATATATAAAGAACTCCTACAACTCAATAATAAAAAGACAAACAACCCAATTAAAAAATGGGCAAAAGACTTGAACAGACACTTCACAAAAGAAGATATACGAATGGCCAATAAGCACATGAAAAGGTGCTCAACATCATTAGTCATCAGGGAAATGCAAATTAAAACCACAATGAGATACCACTNCACACCCACTAGAATGGCTAAAATTAAAAAGACTGACAATACCAAATGTTGGCGAGGATGTGGAGCAACTGGAACTCTCATACATTGCTGGTGGGAGTGTAAAATGGTACAACCACTTTGGAAAACNGTTTGGCAGTTTCTTATAAAGTTAAACATACACCTACCCTATGACCCAGCAATTCCACTCCTAGGTATTTACCCAAGAGAAATGAAAACATATGTCCACAAAAAGACTTGTACANGAATGTTCATAGCAGCTTTATTCATAATAGCCCAAAACTGGAAACAACCCAAATGTCCATCAACAGGNGAATGGATAAACAAATTGTGGTATATTCATACAATGGAATACTACTCAGCAATAAAAAGGAACGAACTACTGATACACGCAACAACATGGATGAATCTCAAAAACATTATGCTGAGCGAAAGAAGCCAGACACAAAAGAGTACATACTGTATGATTCCATTTATATGAAGTTCTAGAACAGGCAAAACTAATCTATGGTGATAGAAATCAGAACAGTGGTTGCCTCCGGGGGGGTGGGGGATTGACTGGAAAGGGGCACGAGGGAACTTTCTGGGGTGATGGAAATGTTCTATATCTTGATTGGGGTGGTGGTTACACGGGTGTATACATTTGTCAAAACTCATCGAACTGTACACTTAAGATCTGTGCATTTTATTGTATGTAAATTATACCTCAANAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1ME2_3end | CAD1 | 150 | 160 | - | 14.95 | TGATGACTAAT |
| L1ME2_3end | THRB | 359 | 371 | - | 14.94 | GGGTCATAGGGTA |
| L1ME2_3end | CDX4 | 556 | 564 | + | 14.91 | GCAATAAAA |
| L1ME2_3end | Nfe2l2 | 365 | 375 | + | 14.91 | ATGACCCAGCA |
| L1ME2_3end | DOF4.2 | 43 | 53 | + | 14.89 | AAAAAGACAAA |
| L1ME2_3end | cad | 555 | 565 | + | 14.81 | AGCAATAAAAA |
| L1ME2_3end | NEUROG2 | 411 | 420 | - | 14.80 | GACATATGTT |
| L1ME2_3end | KLF5 | 738 | 747 | - | 14.78 | CCCCCACCCC |
| L1ME2_3end | ZNF184 | 754 | 766 | + | 14.76 | TGGAAAGGGGCAC |
| L1ME2_3end | BHLHE23 | 411 | 420 | + | 14.75 | AACATATGTC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
