L1ME2_3end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000294 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Eutheria |
| Length | 911 |
| Kimura value | 25.48 |
| Tau index | 0.8717 |
| Description | 3' end of L1 retrotransposon, L1ME2_3end subfamily |
| Comment | - |
| Sequence |
CTTGTATCCAGAATATATAAAGAACTCCTACAACTCAATAATAAAAAGACAAACAACCCAATTAAAAAATGGGCAAAAGACTTGAACAGACACTTCACAAAAGAAGATATACGAATGGCCAATAAGCACATGAAAAGGTGCTCAACATCATTAGTCATCAGGGAAATGCAAATTAAAACCACAATGAGATACCACTNCACACCCACTAGAATGGCTAAAATTAAAAAGACTGACAATACCAAATGTTGGCGAGGATGTGGAGCAACTGGAACTCTCATACATTGCTGGTGGGAGTGTAAAATGGTACAACCACTTTGGAAAACNGTTTGGCAGTTTCTTATAAAGTTAAACATACACCTACCCTATGACCCAGCAATTCCACTCCTAGGTATTTACCCAAGAGAAATGAAAACATATGTCCACAAAAAGACTTGTACANGAATGTTCATAGCAGCTTTATTCATAATAGCCCAAAACTGGAAACAACCCAAATGTCCATCAACAGGNGAATGGATAAACAAATTGTGGTATATTCATACAATGGAATACTACTCAGCAATAAAAAGGAACGAACTACTGATACACGCAACAACATGGATGAATCTCAAAAACATTATGCTGAGCGAAAGAAGCCAGACACAAAAGAGTACATACTGTATGATTCCATTTATATGAAGTTCTAGAACAGGCAAAACTAATCTATGGTGATAGAAATCAGAACAGTGGTTGCCTCCGGGGGGGTGGGGGATTGACTGGAAAGGGGCACGAGGGAACTTTCTGGGGTGATGGAAATGTTCTATATCTTGATTGGGGTGGTGGTTACACGGGTGTATACATTTGTCAAAACTCATCGAACTGTACACTTAAGATCTGTGCATTTTATTGTATGTAAATTATACCTCAANAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1ME2_3end | NEUROG1 | 411 | 420 | + | 15.44 | AACATATGTC |
| L1ME2_3end | NUC | 43 | 54 | - | 15.38 | GTTTGTCTTTTT |
| L1ME2_3end | YAP7 | 150 | 160 | + | 15.32 | ATTAGTCATCA |
| L1ME2_3end | IDD11 | 43 | 54 | + | 15.31 | AAAAAGACAAAC |
| L1ME2_3end | KLF10 | 738 | 746 | + | 15.20 | GGGGTGGGG |
| L1ME2_3end | IDD1 | 43 | 54 | - | 15.13 | GTTTGTCTTTTT |
| L1ME2_3end | Bcl11B | 176 | 184 | + | 15.12 | AAACCACAA |
| L1ME2_3end | NDT80 | 636 | 644 | + | 15.06 | GACACAAAA |
| L1ME2_3end | SEP1 | 471 | 483 | + | 15.03 | CCAAAACTGGAAA |
| L1ME2_3end | IDD7 | 41 | 54 | + | 15.03 | ATAAAAAGACAAAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
