L1ME2_3end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000294 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Eutheria |
| Length | 911 |
| Kimura value | 25.48 |
| Tau index | 0.8717 |
| Description | 3' end of L1 retrotransposon, L1ME2_3end subfamily |
| Comment | - |
| Sequence |
CTTGTATCCAGAATATATAAAGAACTCCTACAACTCAATAATAAAAAGACAAACAACCCAATTAAAAAATGGGCAAAAGACTTGAACAGACACTTCACAAAAGAAGATATACGAATGGCCAATAAGCACATGAAAAGGTGCTCAACATCATTAGTCATCAGGGAAATGCAAATTAAAACCACAATGAGATACCACTNCACACCCACTAGAATGGCTAAAATTAAAAAGACTGACAATACCAAATGTTGGCGAGGATGTGGAGCAACTGGAACTCTCATACATTGCTGGTGGGAGTGTAAAATGGTACAACCACTTTGGAAAACNGTTTGGCAGTTTCTTATAAAGTTAAACATACACCTACCCTATGACCCAGCAATTCCACTCCTAGGTATTTACCCAAGAGAAATGAAAACATATGTCCACAAAAAGACTTGTACANGAATGTTCATAGCAGCTTTATTCATAATAGCCCAAAACTGGAAACAACCCAAATGTCCATCAACAGGNGAATGGATAAACAAATTGTGGTATATTCATACAATGGAATACTACTCAGCAATAAAAAGGAACGAACTACTGATACACGCAACAACATGGATGAATCTCAAAAACATTATGCTGAGCGAAAGAAGCCAGACACAAAAGAGTACATACTGTATGATTCCATTTATATGAAGTTCTAGAACAGGCAAAACTAATCTATGGTGATAGAAATCAGAACAGTGGTTGCCTCCGGGGGGGTGGGGGATTGACTGGAAAGGGGCACGAGGGAACTTTCTGGGGTGATGGAAATGTTCTATATCTTGATTGGGGTGGTGGTTACACGGGTGTATACATTTGTCAAAACTCATCGAACTGTACACTTAAGATCTGTGCATTTTATTGTATGTAAATTATACCTCAANAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1ME2_3end | ZNF558 | 68 | 96 | + | 15.98 | AATGGGCAAAAGACTTGAACAGACACTTC |
| L1ME2_3end | IDD4 | 41 | 55 | + | 15.94 | ATAAAAAGACAAACA |
| L1ME2_3end | nub | 886 | 896 | + | 15.87 | TATGTAAATTA |
| L1ME2_3end | IDD6 | 40 | 55 | - | 15.86 | TGTTTGTCTTTTTATT |
| L1ME2_3end | IDD6 | 40 | 55 | - | 15.84 | TGTTTGTCTTTTTATT |
| L1ME2_3end | ZFP14 | 259 | 273 | + | 15.64 | GGAGCAACTGGAACT |
| L1ME2_3end | SREBF2 | 778 | 787 | + | 15.54 | CTGGGGTGAT |
| L1ME2_3end | KLF4 | 739 | 746 | - | 15.48 | CCCCACCC |
| L1ME2_3end | JKD | 43 | 54 | - | 15.47 | GTTTGTCTTTTT |
| L1ME2_3end | NEUROG1 | 411 | 420 | - | 15.45 | GACATATGTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
