L1MB8_3end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000274 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Eutheria |
| Length | 925 |
| Kimura value | 19.49 |
| Tau index | 0.8421 |
| Description | 3' end of L1 retrotransposon, L1MB8_3end subfamily |
| Comment | ORF2 ends at bp ~675 |
| Sequence |
CTTGTATCCAGAATATATAAAGAACTCTTACAACTCAATAATAAAAAGACAAATAACCCAATTNAAAAATGGGCAAAGGATCTGAATAGACATTTCTCCAAAGAAGATATACAAATGGCCAATAAGCACATGAAAAGATGCTCAACATCATTAGTCATCAGGGAAATGCAAATCAAAACCACAATGAGATACCACTTCACACCCACTAGGATGGCTATAATCAAAAAGACAGATAATAACAAGTGTTGGCGAGGATGTGGAGAAATTGGAACCCTCATACACTGCTGGTGGGAATGTAAAATGGTGCAGCCGCTTTGGAAAACAGTCTGGCAGTTCCTCAAAAGGTTAAACATAGAGTTACCATATGACCCAGCAATTCCACTCCTAGGTATATACCCAAGAGAAATGAAAACATATGTCCACACAAAAACTTGTACACGAATGTTCATAGCAGCATTATTCATAATAGCCAAAAAGTGGAAACAACCCAAATGTCCATCAACTGATGAATGGATAAATAAAATGTGGTATATCCATACAATGGAATATTATTCGGCAATAAAAAGGAATGAAGTACTGATACATGCTACAACATGGATGAACCTTGAAAACATTATGCTAAGTGAAAGAAGCCAGTCACAAAAGACCACATATTGTATGATTCCATTTATATGAAATGTCCAGAATAGGCAAATCTATAGAGACAGAAAGTAGATTAGTGGTTGCCTAGGGCTGGGGGGAAGGGGGAATGGGGAGTGACTGCTAATGGGTACGGGGTTTCTTTTNGGGGTGATGAAAATGTTCTAAAATGATTGTGGTGATGGTTGCACAACTCTGTGAATATACTAAAAACCATTGAATTGTACACTTTAAATGGGTGAATTGTATGGTATGTGAATTATATCTCAATAAAGCTGTTAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1MB8_3end | NEUROG2 | 411 | 420 | - | 14.80 | GACATATGTT |
| L1MB8_3end | BHLHE23 | 411 | 420 | + | 14.75 | AACATATGTC |
| L1MB8_3end | HOXD9 | 556 | 564 | + | 14.72 | GCAATAAAA |
| L1MB8_3end | PRDM9 | 735 | 754 | + | 14.57 | GGGGGGAAGGGGGAATGGGG |
| L1MB8_3end | PI | 471 | 484 | + | 14.55 | CAAAAAGTGGAAAC |
| L1MB8_3end | BHLHE22 | 411 | 420 | + | 14.54 | AACATATGTC |
| L1MB8_3end | OLIG1 | 411 | 420 | + | 14.53 | AACATATGTC |
| L1MB8_3end | AT1G74840 | 509 | 517 | + | 14.47 | AATGGATAA |
| L1MB8_3end | CEBPD | 825 | 832 | + | 14.47 | TTGCACAA |
| L1MB8_3end | CDF3 | 472 | 479 | + | 14.46 | AAAAAGTG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
