L1MB8_3end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000274 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Eutheria |
| Length | 925 |
| Kimura value | 19.49 |
| Tau index | 0.8421 |
| Description | 3' end of L1 retrotransposon, L1MB8_3end subfamily |
| Comment | ORF2 ends at bp ~675 |
| Sequence |
CTTGTATCCAGAATATATAAAGAACTCTTACAACTCAATAATAAAAAGACAAATAACCCAATTNAAAAATGGGCAAAGGATCTGAATAGACATTTCTCCAAAGAAGATATACAAATGGCCAATAAGCACATGAAAAGATGCTCAACATCATTAGTCATCAGGGAAATGCAAATCAAAACCACAATGAGATACCACTTCACACCCACTAGGATGGCTATAATCAAAAAGACAGATAATAACAAGTGTTGGCGAGGATGTGGAGAAATTGGAACCCTCATACACTGCTGGTGGGAATGTAAAATGGTGCAGCCGCTTTGGAAAACAGTCTGGCAGTTCCTCAAAAGGTTAAACATAGAGTTACCATATGACCCAGCAATTCCACTCCTAGGTATATACCCAAGAGAAATGAAAACATATGTCCACACAAAAACTTGTACACGAATGTTCATAGCAGCATTATTCATAATAGCCAAAAAGTGGAAACAACCCAAATGTCCATCAACTGATGAATGGATAAATAAAATGTGGTATATCCATACAATGGAATATTATTCGGCAATAAAAAGGAATGAAGTACTGATACATGCTACAACATGGATGAACCTTGAAAACATTATGCTAAGTGAAAGAAGCCAGTCACAAAAGACCACATATTGTATGATTCCATTTATATGAAATGTCCAGAATAGGCAAATCTATAGAGACAGAAAGTAGATTAGTGGTTGCCTAGGGCTGGGGGGAAGGGGGAATGGGGAGTGACTGCTAATGGGTACGGGGTTTCTTTTNGGGGTGATGAAAATGTTCTAAAATGATTGTGGTGATGGTTGCACAACTCTGTGAATATACTAAAAACCATTGAATTGTACACTTTAAATGGGTGAATTGTATGGTATGTGAATTATATCTCAATAAAGCTGTTAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1MB8_3end | JKD | 43 | 54 | - | 16.61 | ATTTGTCTTTTT |
| L1MB8_3end | CDX1 | 555 | 564 | + | 16.48 | GGCAATAAAA |
| L1MB8_3end | IDD7 | 41 | 54 | + | 16.42 | ATAAAAAGACAAAT |
| L1MB8_3end | PRDM9 | 734 | 753 | + | 16.38 | TGGGGGGAAGGGGGAATGGG |
| L1MB8_3end | IDD11 | 43 | 54 | + | 16.31 | AAAAAGACAAAT |
| L1MB8_3end | IDD1 | 43 | 54 | - | 16.03 | ATTTGTCTTTTT |
| L1MB8_3end | IDD5 | 41 | 54 | - | 15.99 | ATTTGTCTTTTTAT |
| L1MB8_3end | NUC | 43 | 54 | - | 15.82 | ATTTGTCTTTTT |
| L1MB8_3end | SGR5 | 42 | 54 | + | 15.59 | TAAAAAGACAAAT |
| L1MB8_3end | cad | 555 | 565 | + | 15.51 | GGCAATAAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
