L1MB7_3end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000273 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Eutheria |
| Length | 931 |
| Kimura value | 19.40 |
| Tau index | 0.6940 |
| Description | 3' end of L1 retrotransposon, L1MB7_3end subfamily |
| Comment | ORF2 ends at bp ~675 |
| Sequence |
CTTGTATCCAGAATATATAAAGAACTCTTACAACTCAACAATAAAAAGACAAATAACCCAATTNAAAAATGGGCAAAGGATTTGAATAGACATTTCTCCAAAGAAGATATACAAATGGCCAATAAGCACATGAAAAGATGCTCAACATCATTAGTCATTAGGGAAATGCAAATCAAAACCACAATGAGATACCACTTCACACCCACTAGGATGGCTATAATNAAAAAGACAGACAATAACAAGTGTTGGCGAGGATGTGGAGAAATTGGAACCCTCATACATTGCTGGTGGGAATGTAAAATGGTGCAGCCGCTTTGGAAAACAGTTTGGCAGTTCCTCAAAAAGTTAAACATAGAGTTACCATATGACCCAGCAATTCCACTCCTAGGTATATACCCAAGAGAANTGAAAACATATGTCCACACAAAAACTTGTACACGAATGTTCATAGCAGCATTATTCATAATAGCCAAAAAGTGGAAACAACCCAAATGTCCATCAACTGATGAATGGATAAACAAAATGTGGTATATCCATACAATGGAATATTATTCGGCCATAAAAAGGAATGAAGTACTGATACATGCTACAACATGGATGAACCTTGAAAACATTATGCTAAGTGAAAGAAGCCAGACACAAAAGGCCACATATTGTATGATTCCATTTATATGAAATGTCCAGAATAGGCAAATCCATAGAGACAGAAAGTAGATTAGTGGTTGCCAGGGGCTGGGGGGAGGGGGGAATGGGGAGTGACTGCTAATGGGTACGGGGTTTCTTTTTGGGGTGATGAAAATGTTCTGGAATTAGATAGTGGTGATGGTTGCACAACTCTGTGAATATACTAAAAACCACTGAATTGTACACTTTAAAAGGGTGAATTTTATGGTATGTGAATTATATCTCAATAAAGCTGTTATTTTAAAAA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1MB7_3end | NDT80 | 636 | 644 | + | 15.06 | GACACAAAA |
| L1MB7_3end | CDX4 | 556 | 564 | + | 15.02 | GCCATAAAA |
| L1MB7_3end | Tbx6 | 196 | 204 | - | 14.98 | GGGTGTGAA |
| L1MB7_3end | Nfe2l2 | 365 | 375 | + | 14.91 | ATGACCCAGCA |
| L1MB7_3end | DOF4.2 | 43 | 53 | + | 14.89 | AAAAAGACAAA |
| L1MB7_3end | NEUROG2 | 411 | 420 | - | 14.80 | GACATATGTT |
| L1MB7_3end | ZNF320 | 734 | 753 | + | 14.76 | TGGGGGGAGGGGGGAATGGG |
| L1MB7_3end | BHLHE23 | 411 | 420 | + | 14.75 | AACATATGTC |
| L1MB7_3end | Klf15 | 735 | 756 | - | 14.55 | CTCCCCATTCCCCCCTCCCCCC |
| L1MB7_3end | PI | 471 | 484 | + | 14.55 | CAAAAAGTGGAAAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
