L1MB7_3end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000273 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Eutheria |
| Length | 931 |
| Kimura value | 19.40 |
| Tau index | 0.6940 |
| Description | 3' end of L1 retrotransposon, L1MB7_3end subfamily |
| Comment | ORF2 ends at bp ~675 |
| Sequence |
CTTGTATCCAGAATATATAAAGAACTCTTACAACTCAACAATAAAAAGACAAATAACCCAATTNAAAAATGGGCAAAGGATTTGAATAGACATTTCTCCAAAGAAGATATACAAATGGCCAATAAGCACATGAAAAGATGCTCAACATCATTAGTCATTAGGGAAATGCAAATCAAAACCACAATGAGATACCACTTCACACCCACTAGGATGGCTATAATNAAAAAGACAGACAATAACAAGTGTTGGCGAGGATGTGGAGAAATTGGAACCCTCATACATTGCTGGTGGGAATGTAAAATGGTGCAGCCGCTTTGGAAAACAGTTTGGCAGTTCCTCAAAAAGTTAAACATAGAGTTACCATATGACCCAGCAATTCCACTCCTAGGTATATACCCAAGAGAANTGAAAACATATGTCCACACAAAAACTTGTACACGAATGTTCATAGCAGCATTATTCATAATAGCCAAAAAGTGGAAACAACCCAAATGTCCATCAACTGATGAATGGATAAACAAAATGTGGTATATCCATACAATGGAATATTATTCGGCCATAAAAAGGAATGAAGTACTGATACATGCTACAACATGGATGAACCTTGAAAACATTATGCTAAGTGAAAGAAGCCAGACACAAAAGGCCACATATTGTATGATTCCATTTATATGAAATGTCCAGAATAGGCAAATCCATAGAGACAGAAAGTAGATTAGTGGTTGCCAGGGGCTGGGGGGAGGGGGGAATGGGGAGTGACTGCTAATGGGTACGGGGTTTCTTTTTGGGGTGATGAAAATGTTCTGGAATTAGATAGTGGTGATGGTTGCACAACTCTGTGAATATACTAAAAACCACTGAATTGTACACTTTAAAAGGGTGAATTTTATGGTATGTGAATTATATCTCAATAAAGCTGTTATTTTAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1MB7_3end | IDD5 | 41 | 54 | - | 15.99 | ATTTGTCTTTTTAT |
| L1MB7_3end | Klf15 | 737 | 758 | - | 15.92 | CACTCCCCATTCCCCCCTCCCC |
| L1MB7_3end | SP4 | 737 | 745 | + | 15.85 | GGGGAGGGG |
| L1MB7_3end | NUC | 43 | 54 | - | 15.82 | ATTTGTCTTTTT |
| L1MB7_3end | SGR5 | 42 | 54 | + | 15.59 | TAAAAAGACAAAT |
| L1MB7_3end | HSF2 | 797 | 809 | - | 15.58 | TTCCAGAACATTT |
| L1MB7_3end | NEUROG1 | 411 | 420 | - | 15.45 | GACATATGTT |
| L1MB7_3end | NEUROG1 | 411 | 420 | + | 15.44 | AACATATGTC |
| L1MB7_3end | TBX20 | 195 | 205 | - | 15.14 | TGGGTGTGAAG |
| L1MB7_3end | Bcl11B | 176 | 184 | + | 15.12 | AAACCACAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
