L1MB7_3end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000273 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Eutheria |
| Length | 931 |
| Kimura value | 19.40 |
| Tau index | 0.6940 |
| Description | 3' end of L1 retrotransposon, L1MB7_3end subfamily |
| Comment | ORF2 ends at bp ~675 |
| Sequence |
CTTGTATCCAGAATATATAAAGAACTCTTACAACTCAACAATAAAAAGACAAATAACCCAATTNAAAAATGGGCAAAGGATTTGAATAGACATTTCTCCAAAGAAGATATACAAATGGCCAATAAGCACATGAAAAGATGCTCAACATCATTAGTCATTAGGGAAATGCAAATCAAAACCACAATGAGATACCACTTCACACCCACTAGGATGGCTATAATNAAAAAGACAGACAATAACAAGTGTTGGCGAGGATGTGGAGAAATTGGAACCCTCATACATTGCTGGTGGGAATGTAAAATGGTGCAGCCGCTTTGGAAAACAGTTTGGCAGTTCCTCAAAAAGTTAAACATAGAGTTACCATATGACCCAGCAATTCCACTCCTAGGTATATACCCAAGAGAANTGAAAACATATGTCCACACAAAAACTTGTACACGAATGTTCATAGCAGCATTATTCATAATAGCCAAAAAGTGGAAACAACCCAAATGTCCATCAACTGATGAATGGATAAACAAAATGTGGTATATCCATACAATGGAATATTATTCGGCCATAAAAAGGAATGAAGTACTGATACATGCTACAACATGGATGAACCTTGAAAACATTATGCTAAGTGAAAGAAGCCAGACACAAAAGGCCACATATTGTATGATTCCATTTATATGAAATGTCCAGAATAGGCAAATCCATAGAGACAGAAAGTAGATTAGTGGTTGCCAGGGGCTGGGGGGAGGGGGGAATGGGGAGTGACTGCTAATGGGTACGGGGTTTCTTTTTGGGGTGATGAAAATGTTCTGGAATTAGATAGTGGTGATGGTTGCACAACTCTGTGAATATACTAAAAACCACTGAATTGTACACTTTAAAAGGGTGAATTTTATGGTATGTGAATTATATCTCAATAAAGCTGTTATTTTAAAAA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1MB7_3end | IDD6 | 40 | 55 | - | 16.76 | TATTTGTCTTTTTATT |
| L1MB7_3end | IDD6 | 40 | 55 | - | 16.75 | TATTTGTCTTTTTATT |
| L1MB7_3end | NEUROG2 | 411 | 420 | + | 16.62 | AACATATGTC |
| L1MB7_3end | JKD | 43 | 54 | - | 16.61 | ATTTGTCTTTTT |
| L1MB7_3end | IDD7 | 41 | 54 | + | 16.42 | ATAAAAAGACAAAT |
| L1MB7_3end | CDX1 | 555 | 564 | + | 16.42 | GGCCATAAAA |
| L1MB7_3end | IDD11 | 43 | 54 | + | 16.31 | AAAAAGACAAAT |
| L1MB7_3end | MAZ | 738 | 745 | - | 16.08 | CCCCTCCC |
| L1MB7_3end | SP1 | 737 | 745 | + | 16.06 | GGGGAGGGG |
| L1MB7_3end | IDD1 | 43 | 54 | - | 16.03 | ATTTGTCTTTTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
