Harlequin
Basic information Differential Expression Stage analysis Survival analysis Correlation analysisThe patients were classified into two groups based on the expression levels of TE families or the identification of TE-initiated transcripts. To assess the statistical difference in survival between the two groups, a log-rank test was performed. The hazard ratio (HR) and p-value were computed using the "survdiff" function from the "survival" package in R.
| Tumor | HR | P_value |
|---|---|---|
| TCGA-PRAD | 3.41 | 0.03 |
| TCGA-ESCA | 2.45 | 0.03 |
| TCGA-PAAD | 1.70 | 0.03 |
| TCGA-READ | 3.09 | 0.04 |
| TCGA-CESC | 1.63 | 0.04 |
| TCGA-OV | 1.46 | 0.05 |
| TCGA-DLBC | 2.63 | 0.08 |
| TCGA-TGCT | 5.00 | 0.08 |
| TCGA-SARC | 1.41 | 0.10 |
| TCGA-THYM | 0.27 | 0.11 |