HERVS71
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000205 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Catarrhini |
| Length | 8978 |
| Kimura value | 7.99 |
| Tau index | 0.9113 |
| Description | Internal region of ERV1 endogenous retrovirus, HERVS71 subfamily |
| Comment | The associated long terminal repeats are LTR6A and LTR6B. |
| Sequence |
TAATGGAGGCCCCAGCGAGANATTAACGCCACCGGGCGAGAGCCGGGCTCGCTCCGGGCTCCCCCGGAAGGACGGCCGGCTTGTAGGGGGGGCGCCACCTGAAAAAANAATTTTCAGGNTCCCCGAAAGGTGACCGTCTTCCGGAGGAGAGCGGATCGACTACCGTGTGGGTGCCCATAAAATTCCACCTCTGAGTCCTCAGCTTCTGACCCCGGGGTCAGGTAGGTCAGATTTGACTTCGGTTCTGGTAAGAGGGAAGCGGCCCTGACGAGGGCGTCCCTCTTTTGACTCTGCCCGTTTCTCTAGGACGCTAGAGGGTNGAGCCCTGGTTTTCTGNTAGGCGCCTCTGTGTCTCTGTCTAGGAGGGAAGTGGCCCTGACAGGGGCCCTCCCTTGACTCAGTCCACGTCCCAGGATGCTGGAGGACTGAGTCCTGGTTTCTGGCAGACCGGNNNNTCNNTCTCTCTCTCTCTCTCTCTTTTTCTATCTCTCATCTTTCTCTTGTTCAAGTTTCTTGGAAATCTCCGGGAAAGAAAANNNNNNNNNNAAAAAAAAACTGTTATAAACTCTGTGTGAATGGTGAGTGAATGAGGGAGGACAAGGGCTTGCGCTTGTCCTCCAGTTTGTAGCTCCACGGCGAAAGCTACGGAGTTCGAGTGGGCCCTCACCTGCGGTTCCGTGGCGACCTCATAAGGCTTAAGGCAGCATCGGGCATAGCTCGATCCGAGCCGGGGGTTTATACCGGCCTGCCAATGCTAAGAGGAGCCCAAGTCCCCTCAGGGGGAGCGGCCAGGCGGGCATCTGACTGATCCCATCACGGGANCCCCTCCCCTTGTCTGTCTAAAAAAAAAAANAAAAAAGGAAAAACTGTCATAACTGTTTACATGCCCTAAAGTCAATTGTTTGTTTTATGTTGATTGTTCTGTTCAGTGTCTATTGTCTTGTTTAGTAGTTGTCAAAGTTTTGCATGTCAAGACGTCGATATTGCCCAAGACGTCTAGGTAAAAACTTCTTCAAGGTCCTTAGTGCTGATTTTTTGTCACAGGAGGTTAAATTTCTCATCAATCATTTAGGCTGGCCACCACAGTCCTGTCTTTTCTGCCAGAAGCAAGTCAAGTGTTGTTACGAGAACGAGTGTGAAAAACATTCGCCTGATTAAGATTTCTGGCACCATGAAAGTTGTAAGTATTTAGATCGTCATACCCCACGTCCAAGTGATTAGACCTCCTCTAAACTAAACCGGTAGTGGGTTCAAAACAGCCACCCTGCAGATTTCCTTGCTCACCTCTTTTGTCATTCTGTAACTTTTCCTGTGCCCTTAAATAGAACACTGTGTAAGGAAACGTACGCCCGTACTGCTTTACTTCGTTTAGATTCTTACTCTGTTCCTCTGTGGCTACTCTCCCATCTTAAAAATGATCCGAGTAGTCCTTTTCCNCCTCGTCCCTGCCCCCTACCCCGCACATCTCGTTTTCCGGTGCGACAGCAAGTTCAGCGTCTCCAGGACTTGGCTCTGCTCTCACTCCTTAAACCCTTAAAAGAAAAAGCTAAGTTTAAGCTATTTGCCTTTAAGTCATAGAGACACCAAAAGTATTTAAGGTGCAGATCTAGAAGAAGAAGAAGANNGAGAACGCCTAGATCAAACTGACCCAGAAGATCTCAGGCTGGCCCCTAGTCCTCCTCCCTCAATCTTAAAGCTACAGCAATGTGGCAAGTAGTATTAGCTGTTGTAGTTTTTCTGCTNCTTTCTGGTCATGTTGATTCTGTTCTTTCGATACTCCAGCCCCCCAAGGAATGAGTTTCTCTGTCCGTGCTAGGTTTAATATCTATGCTCAANATCTTATTAAATTGCCTTCAAANAANAAAAANAANNNNAAAACGGGAAACACTTCCTCCCAGCCTTGTAAAGGTTAGAGCCCTCTCCAATGTATGCTGCAGAATTTTTCTCTCGGTTTCTCAGAGGATTATAAAGTCCGCCTTAAAAAAGGCAAGCTCCGGACACTCTGCGAAATAGAATGGCCAAAGTTTAGAGTCGAGTGGCCCCCTGAAGGGTCATTGAACCTCACAATTGTTCAAGCTGTGTGGCGGGTTGTTACTGAAACTCCCAGCCACCCTGATCAGTTTCCCTACATTGATCAATGGCTAAGTTTGGTCAGGAGCCCCCCTCCATGGCTCCGTTCATGCGCCATTCATAATTCTACCTCCAAGGTCCTCCTGAGCCAGACCGCGTTTTCGCCTCGACCCTCAGCCGGTTCGGCTCCCCCTGTACTGCCTCCCTCTGAAGAAGAGGAGAGTCTCCCTCACCCAGTCCCACCGCCTTACAACCAGCCTGCTCCCTTAAAGTTATCCCATGTCTCCTCGACGACGTCCCCTGTAGGCTCGCCACCCATTGCCTCTCGATCGCGACCGCGGCGGGAGGAAGTAGCCCCTCTACTACCACTGAGAGAGGCACAAGTCCCTCCGGGTGACGAGCGCTCAGCCCCCTTCTTAGTTTATGTCCCTTTTTCTACTTCTGACTTGTATAATTGGAAAACCCATAATCCTCCCTTCTCTGAAAAGCCCCAGGCTTTGACCTCTCTGACGGAGTCCGTACTCCGGACTCACCCGCCCACCTAGGATGATTGCCAACAGCTCCTTTTAACCCTTTTCACCTCTGAAGAGAAGGAACGTATCCGAAGAGAGGCCAAAAAGTACTTCCTCGCATCAGCCAATGGACCGGAGGAGGAAGCTAGAGACCTCCTTGAGGAGGTCTTTCCCTCTACCCGGCCTAACCGGGACCCAAATTCCTCAAGTGGAAGGAGAGCTTTAGACGATTTTCACCGGTATCTCCTCGCGGGTATTAAAGGAGCCGCTCGGAAACCCATAAACTTGTCTAAGACGACCGAAGTTGTCCAGGGGCCCGATGAGTCACCAGGAGCGTTTTTAGAGCGCCTCCAGGAGGCTTATCGGATTTACACCCCTTTTGACCCGGCGGCTCCCGAAAATAGCCGTGCTCTTAATTTGGCATTTGTGGCTCAGGCAGCCCCGGATATTAAAAGGAAACTCCAAAAACTGGAAGGATTTGCTAGAATGAATATCAGTCAGCTTTTAGAAATAGCCCAAAAAGTTTTTGACAATCGAGAGTTTGAAAAACAAAAACAAGCAACACAGGCAGCTGAAAAGGCCGCTGATAAAGCATTCAAAAGACAAACAAAAATCTTAGTGGCGGCTATCCAAGAGGACAGAATGAAATGGCCCCCATTCCAGAAGAATGGCCAAGGAACCTCGGGTTCCCACCAGAAAAGTAAAAGAGGTGAACAGGCCCCTCTAGGAAAAACCAATGTGCCTATTGCAAGCAGACTGGGCACTGGAAAAAGGAGTGCCCACTACTGCCANAAGAAAAGTCAGAAAACAAAAAGGTCCTCACCCTGCCCGCAACGGAGGAGCCTGATGATTGACGGGGCCAGGGCTCCCTCGCTCTTGGCCCCCAGGANCCCATGGTAACTGCTACAGTGGGGGGCCAGCCTGTACGTTTCCTAGTAGACACCGGGGCGGAGCACTCGGTACTGCAGACTCCCTTGGGCAGTGTCTCAAATAAAAAAATGACTGTACAAAGGGCAACTGGAGCTATTCAAGAATATCCTGTCACACGCTCCCGAGAAGTAAACTTGGGACAGAAAAGAGTGACACACTCTTTTCTNGTGGTTCCAGAGTGTCCTTTTCCTCTCCTTGGACGAGACCTGCTCCATAAGTTACAGGCCTCAATCTCCTTTTCAGCTCAGCAGGCTCATCTCACACTAGGAAATGCAACTTCCCCCACTGCCCAACTCTTGCTAACTACCCCTCTGTCAGAAGAATACCTTCTGGTTTCACCATCACAATCACCGGAGGAGAATACTAATACTCTTTTGTTGGACNTACAGACACTTTTTCCCCGAGTTTGGGCCGAGTCAAACCCTCCCGGACTGGCTAAACACCATCCGCCAGTGGTTGTAGAACTCTTGGCCACTGCCATACCGGTCCAGGTAAAGCAATACCCCATGAGTCAGCAGGCTAGAGAGGNGATTAATCCCCACATTCAATGACTGTTACAAGCTGGCATACTTACACCATGTCAGTCGGCCTGGAACACNCCATTTTTGCCGGTCCAGAAACCTGGAACAAATGATTACCGGCCGGTACAAGACTTAAGGGAAGTTAATAAATGGACTGTTACTGTCCATCCAACCGTCCCTAATCCTTATACTCTACTCAGCCTGCTCCCACCAGAACATACAGTATACACTGTCCTTGACCTGAAAGATGCTTTCTTTGCTATTCCTCTGGCCCCCAAAAGCCAGCCGATTTTTGCATTTGAATGGACAGATCCAAGATCAGGAGACACTACCCAACTGACTTGGACTCAGTTACCTCAGGGTTTTAAAAATTCCCCCACCCTTTTTGGGGAGGCTCTTCGGCAAGATCTTATACCTTCCGAGCTAGTCACCCTAACTGTACTCTTCTTCAGTATGTAGATGATATTTTAATAGCTACTGAAACTATGGACAGTTGTCTACAACACACGAGGGACCTGCTCTACCTCCTTCAGGAGCTCGGGTATGGAGTCTCAGCCAAAAAGGCCCAGCTTTGTCTTCCCAGAGTGTCCTACCTGGGGTACGAGATAAACCAAGGAAAAAGGGCACTCACCAGTGCCCGGAAAGAAGCCATCCTGCGAATCCCCACTCCCGCCACCAAGAGACGGGTACGCGAATTNCTGGGGGCCGTGGGATACTGTCGCCTCTGGATATCGGGGTTCGCGGAGATTGCAAAGCCCTTGTATACTGCTACAGGANGNAATGGCCCGCTAATTTGGACAGACACNGAAGAACAGGCTTTTCAAAACCTGAAAAAGGCATTAACTGAAGCCCCTGCTTTAGCCCTCCCTAATATCTCAAAGCCGTTTCACCTGTTTGTCCATGAAAGCCAGGGAGTTGCTAAAGAGGTGCTTACTCAGACTTTAAGACCCTGGAGACGCCCAGTGGCCTATTTATCTAAGAGGCTGGATCCTGTGGCCTCTGGATGGCCAAGTTGTCTGCGAGCCGTAGCGGCTACAGCAAGCCTAGTCCAAGAAGNTGATAAGTTAACTCTAGGCCAAAATTTAACCCTTACAGCTCCTCATGCCGTAGAGACCTTACTACGAAGTGCTTCTGGCAAATGGATGTCAAATGCTCGCATCTTGCAGTATCAGAGTTTACTGTTAGATCAGCCTCGTTTGACTTTCTCTCCCACAAGGTGTTTNAATCCAGCTACACTACTTCCTGACCCAGACTCCACTATTCCTGCTCATGACTGTCAAGAACTGTTAGAAACTACCGAAACTGGCCGACCTGATCTTCAAGATGTGCCCCTAGAAAAGGCGGATGCCGCCGTGTTCACAGACGGTAGCAGCTTCCTCGAGCAGGGAGTACGAAAAGCCGGTGCAGCTGTTACCACGGAGACAGATGTGTTGTAGGCTCAGGCTTTACCAGCGAACACCTCAGCGCAAAAGGCTGAATTGATCGCCCTCACTCAGGCTCTCCGATGGGGTAAGGATAAACGTATTAACATTTACACTGACAGCAGGTACGCCTTTGCTACTGTGCATGTACATGGAGCCATCTACCAGGAANGCGGGCTACTCACCTCAGCAGGAAAGGCTATCAAAAACAAAGAAGAAATTCTAGCCCTGCTTGAAGCCGTGTGGCTCCCTCAGCAGGTAGCTGTGATCCACTGCAAAGGACATCAAAAAGAAAACACGGCCGTTGCCCGTAGTAACCAGAAAGCTGATTCAGCAGCTCAGGTCGCAGCGNGACTTTCAGTCACGCCTCTAAACTTGCTGCCCACAGTCTCCTTTCCACAGCCAGATCTGCCTGACAATCCCGTATACTCAACAAAANAAAAAAAACTGGCTTCAGATCTCAGAGCCAATAAAAATCAGGAAAGTTAGTAGATTCTTCCTGACTCTAGAATCTTCATACCCCGAACTCTTAAAGAAACTTTAATCAGTCACCTACAGTCTACCACCCATTTAAGAAGAGCAAAGCTACCTCAGCTCCTCCGGAGCCATTTTAAGATCCCCCGTCTTCAAAGCCTAACAGATCAAGCAGCTCTCCGGTGCACAACCTGCGCCCAGGTAAATGCCAAGCAAGGTCCTAAACCCAGCCCAGGCCACCGTCTCCGAAAAAACTCGCCAGGAGAAAAGTGGGAAATTGACTTTACAGAAGTAAAACCACACCGGGCTAAGTACAAATACCTTCTAGTACTAGTAGACACCTTCTCCGGATGGACTGAGGCATTTGCTACCGAAAACGAAACCGCCAACACGGTAGTTAAGTTTTTACTCAATGAAATCATCCCTCGATATAGGCTGCCTGCTGCCATAGGGTCTGATAATGGACCGGCCTTCACCTCGCCCATAGCTCAGTCAGTCAGTAAGGCGTTAAACATTCAACGGAAGCTCCATTGTGCCTATCGACCCCAGAGCTCCGGGCAGGTAGAACGCATGAACCGCACCCTAAAAAACACTCTTACAAAATTAATCTTAAAAACCGGTGNAAATTAGGTAAGTCTCCTTCCTTTAGCCCTACTTAGAGTAAGGTGCACCCCTTACCAGGCTAGGTTCTCACCTTTTGAAATCATGTATAGGAAGGCGCCGCCTATCTTGCCTAAGCTAAGAGATGCCNAATTAGCAGAAATATCACAAGCTAATTTATTACAGTACCTACAGTCTCTCCAACAGGTACAAGATATCATCCTGCCACTTGTTCGAGGAGCCCATCCCAATCCAATTCCTGACCAGACGGGGTCCTGCCATTCGTTCCAGCCAGGAGACCTAGTGTTTGTTAAAAAGTTCCAGAAAGAAGGACTCACTCCTGCTTAGAAAAGACCTCACACCGTCATCCTCACGACGCCAACGGCTCTGAAGGTGGACGGCATTCCTGCTTAGATTCATCACTCCCGCATCAAAAAGGCCAACAGAGCCCAACTAAAAACATAGGTCCCCAGGCCTAGGTCAGGCCCCTTAAAACTGCGCCTAAGTCAGGTGAAGCCATTAGATTNATTCTTTTTATCTACCTCACTTGTTTGTTTTTGCCCGTTACGTCCTCTGTGCCTTCCTACTCCTTTCTCCTCACCTCTTTCACAACAGGACGTGTATTTGCAAACACCACTTGGAAGGCCGGTACCTCCAAGGAAGTCTCCTTTGCAGTTGATTTATGTGTACTGTTCCCAAAGCCAGCCCGTACCCACGAAGAGCAACACAATCTGCCAGTCCCAGGAGCAGGAAGTGTCGACCTTGCAGCAAGATTCGGACACTCCGGGAGCCAAACTAGATGTGGAAGCTCCAAAGGTGCAGAAAAAGGACTCCAAAATGTTGACTTTTACCTCTGTCCTAGAAATCACCCTGACGCTAGCTGTCGAGATACTTATCAGTTTTTCTGCCCTGATTAGACATGTGTAACTTTAGCCACCTACTCTAAGAGATCAACCAGATCTTCAACTCTTTCCATAAGTCGTGCTTCTCATCCTAAATTATGTACTAGAAAAAATTGTAATCCTCTTACTATAACTGTCCATGACCCTAATTCAACTCAATAGTATCATGGCATGTCATGAAGATTAAGATTTTATATCCCAGGATTTGATGTTAGGACTATGTTCACCATCCAAAANAAAACCCTGGTCTCATGGAGCCCACCCAAGCCAATCGGGCCTTTAACTGATCTAGGTGACCCTATGTTCCAGAAACACCCTGACAAAGTTGATTTAACTGTTCCTCCACCATTCTTAGTTCCTAAGCCCCAGCTACAANGACANCATCTTCAACCCAGCCTGATGTCTATACTAGGTGGAGTACATCATCTCCTTAACCTCACCCAGCCTAAACTAGCCCAAGATTGTTGGCTATGTTTAAAAGCAAAACCCCCTTATTATGTAGGATTAGGAGTAGAAGCCACACTTAAANGTGGCCCTCTATCCTGTCATACACGACCCCGTGCTCTCACACTAGGAGATGTGTCTGGAAACGCTTCCTGTCTGATTAGTACCGGGTATAACTTATCTGCTTCTCCTTTTCAGGCTATTTGTAATCAGTCCCTGCTTACTTCCATAAGCACCTCAGTCTCTTACCAAGCGCCTAACAATACCTGGTTGGCCTGCACCTCAGGTCTCACTCGCTGCATTAATGGAACTGAACCAGGACCTCTCTTGTGCGTGTTAGTTCATGTNCTTCCCCAGGTATACGTGTACAGTGGACCAGAAGGACAACTCCTCATCGCTCCCCCGGAATTACATCCCAGGTTGCGCCGAGCTGCCCCACTNCTGGTTCCCCTCTTGGCCGGTCTTAGCATAGCTGGATCAGCAGCCATTGGTACGGCTGCCCTGGTTCAAGGAGAAACTGGACTAATGTCCCTGTCTCAACAGGTGGATGCTGATTTAAGTAACCTCCAGTCTGCCATAGATATACTACATTCCCAGGTAGAGTCTCTGGCTGAAGTAGTNCTTCAAAACCGCCGAGGCTTAGATCTGCTATTCCTCTCTCAAGGAGGATTATGCGCAGCTCTAGGAGAAAGCTGTTGCTTCTACGCCAATCAATCTGGAGTCATAAAAGATACACTCCAAAAAGTGCGAGAAAATCTAGATAGGCGCCAACAAGAACGAGAAAATAACATCCCCTGGTATCAAAGCATGTTCAACTGGAACCCATGGCTAACTACTCTAATCACTAAGTTAGCCGGACCCCTCCCCATCCTACTATTAAGTCTAATTTTTGGGCCTTGTATATTAAATTAGTTTCTTAATTTTGTAAAACAACGCATAGCTTCTGTCAAACTTATGTATCTTAAGACTCAATATAACCCCCTTGTTATAACTGAGGAATCAACGATTTGATTCCCCAAAAACACAAGTGGGGAAATGAAATGCCTAACGTTGTTTTTACTCTAACTNGTTACTTTGAATTTTGTCCTGCTTGTCTCTTTAATC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| HERVS71 | BPC5 | 7096 | 7125 | - | -48.57 | GGAGAAAGGAGTAGGAAGGCACAGAGGACG |
| HERVS71 | DAL81 | 2398 | 2416 | - | -51.72 | TCCCGCCGCGGTCGCGATC |
| HERVS71 | DAL81 | 2404 | 2422 | + | -52.00 | GACCGCGGCGGGAGGAAGT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
