HERVS71
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000205 |
|---|---|
| TE superfamily | ERV1 |
| TE order | LTR |
| Species | Catarrhini |
| Length | 8978 |
| Kimura value | 7.99 |
| Tau index | 0.9113 |
| Description | Internal region of ERV1 endogenous retrovirus, HERVS71 subfamily |
| Comment | The associated long terminal repeats are LTR6A and LTR6B. |
| Sequence |
TAATGGAGGCCCCAGCGAGANATTAACGCCACCGGGCGAGAGCCGGGCTCGCTCCGGGCTCCCCCGGAAGGACGGCCGGCTTGTAGGGGGGGCGCCACCTGAAAAAANAATTTTCAGGNTCCCCGAAAGGTGACCGTCTTCCGGAGGAGAGCGGATCGACTACCGTGTGGGTGCCCATAAAATTCCACCTCTGAGTCCTCAGCTTCTGACCCCGGGGTCAGGTAGGTCAGATTTGACTTCGGTTCTGGTAAGAGGGAAGCGGCCCTGACGAGGGCGTCCCTCTTTTGACTCTGCCCGTTTCTCTAGGACGCTAGAGGGTNGAGCCCTGGTTTTCTGNTAGGCGCCTCTGTGTCTCTGTCTAGGAGGGAAGTGGCCCTGACAGGGGCCCTCCCTTGACTCAGTCCACGTCCCAGGATGCTGGAGGACTGAGTCCTGGTTTCTGGCAGACCGGNNNNTCNNTCTCTCTCTCTCTCTCTCTTTTTCTATCTCTCATCTTTCTCTTGTTCAAGTTTCTTGGAAATCTCCGGGAAAGAAAANNNNNNNNNNAAAAAAAAACTGTTATAAACTCTGTGTGAATGGTGAGTGAATGAGGGAGGACAAGGGCTTGCGCTTGTCCTCCAGTTTGTAGCTCCACGGCGAAAGCTACGGAGTTCGAGTGGGCCCTCACCTGCGGTTCCGTGGCGACCTCATAAGGCTTAAGGCAGCATCGGGCATAGCTCGATCCGAGCCGGGGGTTTATACCGGCCTGCCAATGCTAAGAGGAGCCCAAGTCCCCTCAGGGGGAGCGGCCAGGCGGGCATCTGACTGATCCCATCACGGGANCCCCTCCCCTTGTCTGTCTAAAAAAAAAAANAAAAAAGGAAAAACTGTCATAACTGTTTACATGCCCTAAAGTCAATTGTTTGTTTTATGTTGATTGTTCTGTTCAGTGTCTATTGTCTTGTTTAGTAGTTGTCAAAGTTTTGCATGTCAAGACGTCGATATTGCCCAAGACGTCTAGGTAAAAACTTCTTCAAGGTCCTTAGTGCTGATTTTTTGTCACAGGAGGTTAAATTTCTCATCAATCATTTAGGCTGGCCACCACAGTCCTGTCTTTTCTGCCAGAAGCAAGTCAAGTGTTGTTACGAGAACGAGTGTGAAAAACATTCGCCTGATTAAGATTTCTGGCACCATGAAAGTTGTAAGTATTTAGATCGTCATACCCCACGTCCAAGTGATTAGACCTCCTCTAAACTAAACCGGTAGTGGGTTCAAAACAGCCACCCTGCAGATTTCCTTGCTCACCTCTTTTGTCATTCTGTAACTTTTCCTGTGCCCTTAAATAGAACACTGTGTAAGGAAACGTACGCCCGTACTGCTTTACTTCGTTTAGATTCTTACTCTGTTCCTCTGTGGCTACTCTCCCATCTTAAAAATGATCCGAGTAGTCCTTTTCCNCCTCGTCCCTGCCCCCTACCCCGCACATCTCGTTTTCCGGTGCGACAGCAAGTTCAGCGTCTCCAGGACTTGGCTCTGCTCTCACTCCTTAAACCCTTAAAAGAAAAAGCTAAGTTTAAGCTATTTGCCTTTAAGTCATAGAGACACCAAAAGTATTTAAGGTGCAGATCTAGAAGAAGAAGAAGANNGAGAACGCCTAGATCAAACTGACCCAGAAGATCTCAGGCTGGCCCCTAGTCCTCCTCCCTCAATCTTAAAGCTACAGCAATGTGGCAAGTAGTATTAGCTGTTGTAGTTTTTCTGCTNCTTTCTGGTCATGTTGATTCTGTTCTTTCGATACTCCAGCCCCCCAAGGAATGAGTTTCTCTGTCCGTGCTAGGTTTAATATCTATGCTCAANATCTTATTAAATTGCCTTCAAANAANAAAAANAANNNNAAAACGGGAAACACTTCCTCCCAGCCTTGTAAAGGTTAGAGCCCTCTCCAATGTATGCTGCAGAATTTTTCTCTCGGTTTCTCAGAGGATTATAAAGTCCGCCTTAAAAAAGGCAAGCTCCGGACACTCTGCGAAATAGAATGGCCAAAGTTTAGAGTCGAGTGGCCCCCTGAAGGGTCATTGAACCTCACAATTGTTCAAGCTGTGTGGCGGGTTGTTACTGAAACTCCCAGCCACCCTGATCAGTTTCCCTACATTGATCAATGGCTAAGTTTGGTCAGGAGCCCCCCTCCATGGCTCCGTTCATGCGCCATTCATAATTCTACCTCCAAGGTCCTCCTGAGCCAGACCGCGTTTTCGCCTCGACCCTCAGCCGGTTCGGCTCCCCCTGTACTGCCTCCCTCTGAAGAAGAGGAGAGTCTCCCTCACCCAGTCCCACCGCCTTACAACCAGCCTGCTCCCTTAAAGTTATCCCATGTCTCCTCGACGACGTCCCCTGTAGGCTCGCCACCCATTGCCTCTCGATCGCGACCGCGGCGGGAGGAAGTAGCCCCTCTACTACCACTGAGAGAGGCACAAGTCCCTCCGGGTGACGAGCGCTCAGCCCCCTTCTTAGTTTATGTCCCTTTTTCTACTTCTGACTTGTATAATTGGAAAACCCATAATCCTCCCTTCTCTGAAAAGCCCCAGGCTTTGACCTCTCTGACGGAGTCCGTACTCCGGACTCACCCGCCCACCTAGGATGATTGCCAACAGCTCCTTTTAACCCTTTTCACCTCTGAAGAGAAGGAACGTATCCGAAGAGAGGCCAAAAAGTACTTCCTCGCATCAGCCAATGGACCGGAGGAGGAAGCTAGAGACCTCCTTGAGGAGGTCTTTCCCTCTACCCGGCCTAACCGGGACCCAAATTCCTCAAGTGGAAGGAGAGCTTTAGACGATTTTCACCGGTATCTCCTCGCGGGTATTAAAGGAGCCGCTCGGAAACCCATAAACTTGTCTAAGACGACCGAAGTTGTCCAGGGGCCCGATGAGTCACCAGGAGCGTTTTTAGAGCGCCTCCAGGAGGCTTATCGGATTTACACCCCTTTTGACCCGGCGGCTCCCGAAAATAGCCGTGCTCTTAATTTGGCATTTGTGGCTCAGGCAGCCCCGGATATTAAAAGGAAACTCCAAAAACTGGAAGGATTTGCTAGAATGAATATCAGTCAGCTTTTAGAAATAGCCCAAAAAGTTTTTGACAATCGAGAGTTTGAAAAACAAAAACAAGCAACACAGGCAGCTGAAAAGGCCGCTGATAAAGCATTCAAAAGACAAACAAAAATCTTAGTGGCGGCTATCCAAGAGGACAGAATGAAATGGCCCCCATTCCAGAAGAATGGCCAAGGAACCTCGGGTTCCCACCAGAAAAGTAAAAGAGGTGAACAGGCCCCTCTAGGAAAAACCAATGTGCCTATTGCAAGCAGACTGGGCACTGGAAAAAGGAGTGCCCACTACTGCCANAAGAAAAGTCAGAAAACAAAAAGGTCCTCACCCTGCCCGCAACGGAGGAGCCTGATGATTGACGGGGCCAGGGCTCCCTCGCTCTTGGCCCCCAGGANCCCATGGTAACTGCTACAGTGGGGGGCCAGCCTGTACGTTTCCTAGTAGACACCGGGGCGGAGCACTCGGTACTGCAGACTCCCTTGGGCAGTGTCTCAAATAAAAAAATGACTGTACAAAGGGCAACTGGAGCTATTCAAGAATATCCTGTCACACGCTCCCGAGAAGTAAACTTGGGACAGAAAAGAGTGACACACTCTTTTCTNGTGGTTCCAGAGTGTCCTTTTCCTCTCCTTGGACGAGACCTGCTCCATAAGTTACAGGCCTCAATCTCCTTTTCAGCTCAGCAGGCTCATCTCACACTAGGAAATGCAACTTCCCCCACTGCCCAACTCTTGCTAACTACCCCTCTGTCAGAAGAATACCTTCTGGTTTCACCATCACAATCACCGGAGGAGAATACTAATACTCTTTTGTTGGACNTACAGACACTTTTTCCCCGAGTTTGGGCCGAGTCAAACCCTCCCGGACTGGCTAAACACCATCCGCCAGTGGTTGTAGAACTCTTGGCCACTGCCATACCGGTCCAGGTAAAGCAATACCCCATGAGTCAGCAGGCTAGAGAGGNGATTAATCCCCACATTCAATGACTGTTACAAGCTGGCATACTTACACCATGTCAGTCGGCCTGGAACACNCCATTTTTGCCGGTCCAGAAACCTGGAACAAATGATTACCGGCCGGTACAAGACTTAAGGGAAGTTAATAAATGGACTGTTACTGTCCATCCAACCGTCCCTAATCCTTATACTCTACTCAGCCTGCTCCCACCAGAACATACAGTATACACTGTCCTTGACCTGAAAGATGCTTTCTTTGCTATTCCTCTGGCCCCCAAAAGCCAGCCGATTTTTGCATTTGAATGGACAGATCCAAGATCAGGAGACACTACCCAACTGACTTGGACTCAGTTACCTCAGGGTTTTAAAAATTCCCCCACCCTTTTTGGGGAGGCTCTTCGGCAAGATCTTATACCTTCCGAGCTAGTCACCCTAACTGTACTCTTCTTCAGTATGTAGATGATATTTTAATAGCTACTGAAACTATGGACAGTTGTCTACAACACACGAGGGACCTGCTCTACCTCCTTCAGGAGCTCGGGTATGGAGTCTCAGCCAAAAAGGCCCAGCTTTGTCTTCCCAGAGTGTCCTACCTGGGGTACGAGATAAACCAAGGAAAAAGGGCACTCACCAGTGCCCGGAAAGAAGCCATCCTGCGAATCCCCACTCCCGCCACCAAGAGACGGGTACGCGAATTNCTGGGGGCCGTGGGATACTGTCGCCTCTGGATATCGGGGTTCGCGGAGATTGCAAAGCCCTTGTATACTGCTACAGGANGNAATGGCCCGCTAATTTGGACAGACACNGAAGAACAGGCTTTTCAAAACCTGAAAAAGGCATTAACTGAAGCCCCTGCTTTAGCCCTCCCTAATATCTCAAAGCCGTTTCACCTGTTTGTCCATGAAAGCCAGGGAGTTGCTAAAGAGGTGCTTACTCAGACTTTAAGACCCTGGAGACGCCCAGTGGCCTATTTATCTAAGAGGCTGGATCCTGTGGCCTCTGGATGGCCAAGTTGTCTGCGAGCCGTAGCGGCTACAGCAAGCCTAGTCCAAGAAGNTGATAAGTTAACTCTAGGCCAAAATTTAACCCTTACAGCTCCTCATGCCGTAGAGACCTTACTACGAAGTGCTTCTGGCAAATGGATGTCAAATGCTCGCATCTTGCAGTATCAGAGTTTACTGTTAGATCAGCCTCGTTTGACTTTCTCTCCCACAAGGTGTTTNAATCCAGCTACACTACTTCCTGACCCAGACTCCACTATTCCTGCTCATGACTGTCAAGAACTGTTAGAAACTACCGAAACTGGCCGACCTGATCTTCAAGATGTGCCCCTAGAAAAGGCGGATGCCGCCGTGTTCACAGACGGTAGCAGCTTCCTCGAGCAGGGAGTACGAAAAGCCGGTGCAGCTGTTACCACGGAGACAGATGTGTTGTAGGCTCAGGCTTTACCAGCGAACACCTCAGCGCAAAAGGCTGAATTGATCGCCCTCACTCAGGCTCTCCGATGGGGTAAGGATAAACGTATTAACATTTACACTGACAGCAGGTACGCCTTTGCTACTGTGCATGTACATGGAGCCATCTACCAGGAANGCGGGCTACTCACCTCAGCAGGAAAGGCTATCAAAAACAAAGAAGAAATTCTAGCCCTGCTTGAAGCCGTGTGGCTCCCTCAGCAGGTAGCTGTGATCCACTGCAAAGGACATCAAAAAGAAAACACGGCCGTTGCCCGTAGTAACCAGAAAGCTGATTCAGCAGCTCAGGTCGCAGCGNGACTTTCAGTCACGCCTCTAAACTTGCTGCCCACAGTCTCCTTTCCACAGCCAGATCTGCCTGACAATCCCGTATACTCAACAAAANAAAAAAAACTGGCTTCAGATCTCAGAGCCAATAAAAATCAGGAAAGTTAGTAGATTCTTCCTGACTCTAGAATCTTCATACCCCGAACTCTTAAAGAAACTTTAATCAGTCACCTACAGTCTACCACCCATTTAAGAAGAGCAAAGCTACCTCAGCTCCTCCGGAGCCATTTTAAGATCCCCCGTCTTCAAAGCCTAACAGATCAAGCAGCTCTCCGGTGCACAACCTGCGCCCAGGTAAATGCCAAGCAAGGTCCTAAACCCAGCCCAGGCCACCGTCTCCGAAAAAACTCGCCAGGAGAAAAGTGGGAAATTGACTTTACAGAAGTAAAACCACACCGGGCTAAGTACAAATACCTTCTAGTACTAGTAGACACCTTCTCCGGATGGACTGAGGCATTTGCTACCGAAAACGAAACCGCCAACACGGTAGTTAAGTTTTTACTCAATGAAATCATCCCTCGATATAGGCTGCCTGCTGCCATAGGGTCTGATAATGGACCGGCCTTCACCTCGCCCATAGCTCAGTCAGTCAGTAAGGCGTTAAACATTCAACGGAAGCTCCATTGTGCCTATCGACCCCAGAGCTCCGGGCAGGTAGAACGCATGAACCGCACCCTAAAAAACACTCTTACAAAATTAATCTTAAAAACCGGTGNAAATTAGGTAAGTCTCCTTCCTTTAGCCCTACTTAGAGTAAGGTGCACCCCTTACCAGGCTAGGTTCTCACCTTTTGAAATCATGTATAGGAAGGCGCCGCCTATCTTGCCTAAGCTAAGAGATGCCNAATTAGCAGAAATATCACAAGCTAATTTATTACAGTACCTACAGTCTCTCCAACAGGTACAAGATATCATCCTGCCACTTGTTCGAGGAGCCCATCCCAATCCAATTCCTGACCAGACGGGGTCCTGCCATTCGTTCCAGCCAGGAGACCTAGTGTTTGTTAAAAAGTTCCAGAAAGAAGGACTCACTCCTGCTTAGAAAAGACCTCACACCGTCATCCTCACGACGCCAACGGCTCTGAAGGTGGACGGCATTCCTGCTTAGATTCATCACTCCCGCATCAAAAAGGCCAACAGAGCCCAACTAAAAACATAGGTCCCCAGGCCTAGGTCAGGCCCCTTAAAACTGCGCCTAAGTCAGGTGAAGCCATTAGATTNATTCTTTTTATCTACCTCACTTGTTTGTTTTTGCCCGTTACGTCCTCTGTGCCTTCCTACTCCTTTCTCCTCACCTCTTTCACAACAGGACGTGTATTTGCAAACACCACTTGGAAGGCCGGTACCTCCAAGGAAGTCTCCTTTGCAGTTGATTTATGTGTACTGTTCCCAAAGCCAGCCCGTACCCACGAAGAGCAACACAATCTGCCAGTCCCAGGAGCAGGAAGTGTCGACCTTGCAGCAAGATTCGGACACTCCGGGAGCCAAACTAGATGTGGAAGCTCCAAAGGTGCAGAAAAAGGACTCCAAAATGTTGACTTTTACCTCTGTCCTAGAAATCACCCTGACGCTAGCTGTCGAGATACTTATCAGTTTTTCTGCCCTGATTAGACATGTGTAACTTTAGCCACCTACTCTAAGAGATCAACCAGATCTTCAACTCTTTCCATAAGTCGTGCTTCTCATCCTAAATTATGTACTAGAAAAAATTGTAATCCTCTTACTATAACTGTCCATGACCCTAATTCAACTCAATAGTATCATGGCATGTCATGAAGATTAAGATTTTATATCCCAGGATTTGATGTTAGGACTATGTTCACCATCCAAAANAAAACCCTGGTCTCATGGAGCCCACCCAAGCCAATCGGGCCTTTAACTGATCTAGGTGACCCTATGTTCCAGAAACACCCTGACAAAGTTGATTTAACTGTTCCTCCACCATTCTTAGTTCCTAAGCCCCAGCTACAANGACANCATCTTCAACCCAGCCTGATGTCTATACTAGGTGGAGTACATCATCTCCTTAACCTCACCCAGCCTAAACTAGCCCAAGATTGTTGGCTATGTTTAAAAGCAAAACCCCCTTATTATGTAGGATTAGGAGTAGAAGCCACACTTAAANGTGGCCCTCTATCCTGTCATACACGACCCCGTGCTCTCACACTAGGAGATGTGTCTGGAAACGCTTCCTGTCTGATTAGTACCGGGTATAACTTATCTGCTTCTCCTTTTCAGGCTATTTGTAATCAGTCCCTGCTTACTTCCATAAGCACCTCAGTCTCTTACCAAGCGCCTAACAATACCTGGTTGGCCTGCACCTCAGGTCTCACTCGCTGCATTAATGGAACTGAACCAGGACCTCTCTTGTGCGTGTTAGTTCATGTNCTTCCCCAGGTATACGTGTACAGTGGACCAGAAGGACAACTCCTCATCGCTCCCCCGGAATTACATCCCAGGTTGCGCCGAGCTGCCCCACTNCTGGTTCCCCTCTTGGCCGGTCTTAGCATAGCTGGATCAGCAGCCATTGGTACGGCTGCCCTGGTTCAAGGAGAAACTGGACTAATGTCCCTGTCTCAACAGGTGGATGCTGATTTAAGTAACCTCCAGTCTGCCATAGATATACTACATTCCCAGGTAGAGTCTCTGGCTGAAGTAGTNCTTCAAAACCGCCGAGGCTTAGATCTGCTATTCCTCTCTCAAGGAGGATTATGCGCAGCTCTAGGAGAAAGCTGTTGCTTCTACGCCAATCAATCTGGAGTCATAAAAGATACACTCCAAAAAGTGCGAGAAAATCTAGATAGGCGCCAACAAGAACGAGAAAATAACATCCCCTGGTATCAAAGCATGTTCAACTGGAACCCATGGCTAACTACTCTAATCACTAAGTTAGCCGGACCCCTCCCCATCCTACTATTAAGTCTAATTTTTGGGCCTTGTATATTAAATTAGTTTCTTAATTTTGTAAAACAACGCATAGCTTCTGTCAAACTTATGTATCTTAAGACTCAATATAACCCCCTTGTTATAACTGAGGAATCAACGATTTGATTCCCCAAAAACACAAGTGGGGAAATGAAATGCCTAACGTTGTTTTTACTCTAACTNGTTACTTTGAATTTTGTCCTGCTTGTCTCTTTAATC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| HERVS71 | Clamp | 462 | 475 | - | 18.41 | GAGAGAGAGAGAGA |
| HERVS71 | Clamp | 464 | 477 | - | 18.41 | GAGAGAGAGAGAGA |
| HERVS71 | eor-1 | 460 | 472 | - | 18.35 | AGAGAGAGAGAGA |
| HERVS71 | eor-1 | 462 | 474 | - | 18.35 | AGAGAGAGAGAGA |
| HERVS71 | eor-1 | 464 | 476 | - | 18.35 | AGAGAGAGAGAGA |
| HERVS71 | eor-1 | 466 | 478 | - | 18.35 | AGAGAGAGAGAGA |
| HERVS71 | HSFA6A | 5958 | 5970 | - | 18.31 | GAAGATTCTAGAG |
| HERVS71 | scrt | 8411 | 8421 | + | 18.31 | TCAACAGGTGG |
| HERVS71 | IRF9 | 6298 | 6312 | + | 18.18 | ACCGAAAACGAAACC |
| HERVS71 | BPC6 | 469 | 489 | + | 18.13 | CTCTCTCTCTTTTTCTATCTC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
