HERVS71
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000205 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Catarrhini |
| Length | 8978 |
| Kimura value | 7.99 |
| Tau index | 0.9113 |
| Description | Internal region of ERV1 endogenous retrovirus, HERVS71 subfamily |
| Comment | The associated long terminal repeats are LTR6A and LTR6B. |
| Sequence |
TAATGGAGGCCCCAGCGAGANATTAACGCCACCGGGCGAGAGCCGGGCTCGCTCCGGGCTCCCCCGGAAGGACGGCCGGCTTGTAGGGGGGGCGCCACCTGAAAAAANAATTTTCAGGNTCCCCGAAAGGTGACCGTCTTCCGGAGGAGAGCGGATCGACTACCGTGTGGGTGCCCATAAAATTCCACCTCTGAGTCCTCAGCTTCTGACCCCGGGGTCAGGTAGGTCAGATTTGACTTCGGTTCTGGTAAGAGGGAAGCGGCCCTGACGAGGGCGTCCCTCTTTTGACTCTGCCCGTTTCTCTAGGACGCTAGAGGGTNGAGCCCTGGTTTTCTGNTAGGCGCCTCTGTGTCTCTGTCTAGGAGGGAAGTGGCCCTGACAGGGGCCCTCCCTTGACTCAGTCCACGTCCCAGGATGCTGGAGGACTGAGTCCTGGTTTCTGGCAGACCGGNNNNTCNNTCTCTCTCTCTCTCTCTCTTTTTCTATCTCTCATCTTTCTCTTGTTCAAGTTTCTTGGAAATCTCCGGGAAAGAAAANNNNNNNNNNAAAAAAAAACTGTTATAAACTCTGTGTGAATGGTGAGTGAATGAGGGAGGACAAGGGCTTGCGCTTGTCCTCCAGTTTGTAGCTCCACGGCGAAAGCTACGGAGTTCGAGTGGGCCCTCACCTGCGGTTCCGTGGCGACCTCATAAGGCTTAAGGCAGCATCGGGCATAGCTCGATCCGAGCCGGGGGTTTATACCGGCCTGCCAATGCTAAGAGGAGCCCAAGTCCCCTCAGGGGGAGCGGCCAGGCGGGCATCTGACTGATCCCATCACGGGANCCCCTCCCCTTGTCTGTCTAAAAAAAAAAANAAAAAAGGAAAAACTGTCATAACTGTTTACATGCCCTAAAGTCAATTGTTTGTTTTATGTTGATTGTTCTGTTCAGTGTCTATTGTCTTGTTTAGTAGTTGTCAAAGTTTTGCATGTCAAGACGTCGATATTGCCCAAGACGTCTAGGTAAAAACTTCTTCAAGGTCCTTAGTGCTGATTTTTTGTCACAGGAGGTTAAATTTCTCATCAATCATTTAGGCTGGCCACCACAGTCCTGTCTTTTCTGCCAGAAGCAAGTCAAGTGTTGTTACGAGAACGAGTGTGAAAAACATTCGCCTGATTAAGATTTCTGGCACCATGAAAGTTGTAAGTATTTAGATCGTCATACCCCACGTCCAAGTGATTAGACCTCCTCTAAACTAAACCGGTAGTGGGTTCAAAACAGCCACCCTGCAGATTTCCTTGCTCACCTCTTTTGTCATTCTGTAACTTTTCCTGTGCCCTTAAATAGAACACTGTGTAAGGAAACGTACGCCCGTACTGCTTTACTTCGTTTAGATTCTTACTCTGTTCCTCTGTGGCTACTCTCCCATCTTAAAAATGATCCGAGTAGTCCTTTTCCNCCTCGTCCCTGCCCCCTACCCCGCACATCTCGTTTTCCGGTGCGACAGCAAGTTCAGCGTCTCCAGGACTTGGCTCTGCTCTCACTCCTTAAACCCTTAAAAGAAAAAGCTAAGTTTAAGCTATTTGCCTTTAAGTCATAGAGACACCAAAAGTATTTAAGGTGCAGATCTAGAAGAAGAAGAAGANNGAGAACGCCTAGATCAAACTGACCCAGAAGATCTCAGGCTGGCCCCTAGTCCTCCTCCCTCAATCTTAAAGCTACAGCAATGTGGCAAGTAGTATTAGCTGTTGTAGTTTTTCTGCTNCTTTCTGGTCATGTTGATTCTGTTCTTTCGATACTCCAGCCCCCCAAGGAATGAGTTTCTCTGTCCGTGCTAGGTTTAATATCTATGCTCAANATCTTATTAAATTGCCTTCAAANAANAAAAANAANNNNAAAACGGGAAACACTTCCTCCCAGCCTTGTAAAGGTTAGAGCCCTCTCCAATGTATGCTGCAGAATTTTTCTCTCGGTTTCTCAGAGGATTATAAAGTCCGCCTTAAAAAAGGCAAGCTCCGGACACTCTGCGAAATAGAATGGCCAAAGTTTAGAGTCGAGTGGCCCCCTGAAGGGTCATTGAACCTCACAATTGTTCAAGCTGTGTGGCGGGTTGTTACTGAAACTCCCAGCCACCCTGATCAGTTTCCCTACATTGATCAATGGCTAAGTTTGGTCAGGAGCCCCCCTCCATGGCTCCGTTCATGCGCCATTCATAATTCTACCTCCAAGGTCCTCCTGAGCCAGACCGCGTTTTCGCCTCGACCCTCAGCCGGTTCGGCTCCCCCTGTACTGCCTCCCTCTGAAGAAGAGGAGAGTCTCCCTCACCCAGTCCCACCGCCTTACAACCAGCCTGCTCCCTTAAAGTTATCCCATGTCTCCTCGACGACGTCCCCTGTAGGCTCGCCACCCATTGCCTCTCGATCGCGACCGCGGCGGGAGGAAGTAGCCCCTCTACTACCACTGAGAGAGGCACAAGTCCCTCCGGGTGACGAGCGCTCAGCCCCCTTCTTAGTTTATGTCCCTTTTTCTACTTCTGACTTGTATAATTGGAAAACCCATAATCCTCCCTTCTCTGAAAAGCCCCAGGCTTTGACCTCTCTGACGGAGTCCGTACTCCGGACTCACCCGCCCACCTAGGATGATTGCCAACAGCTCCTTTTAACCCTTTTCACCTCTGAAGAGAAGGAACGTATCCGAAGAGAGGCCAAAAAGTACTTCCTCGCATCAGCCAATGGACCGGAGGAGGAAGCTAGAGACCTCCTTGAGGAGGTCTTTCCCTCTACCCGGCCTAACCGGGACCCAAATTCCTCAAGTGGAAGGAGAGCTTTAGACGATTTTCACCGGTATCTCCTCGCGGGTATTAAAGGAGCCGCTCGGAAACCCATAAACTTGTCTAAGACGACCGAAGTTGTCCAGGGGCCCGATGAGTCACCAGGAGCGTTTTTAGAGCGCCTCCAGGAGGCTTATCGGATTTACACCCCTTTTGACCCGGCGGCTCCCGAAAATAGCCGTGCTCTTAATTTGGCATTTGTGGCTCAGGCAGCCCCGGATATTAAAAGGAAACTCCAAAAACTGGAAGGATTTGCTAGAATGAATATCAGTCAGCTTTTAGAAATAGCCCAAAAAGTTTTTGACAATCGAGAGTTTGAAAAACAAAAACAAGCAACACAGGCAGCTGAAAAGGCCGCTGATAAAGCATTCAAAAGACAAACAAAAATCTTAGTGGCGGCTATCCAAGAGGACAGAATGAAATGGCCCCCATTCCAGAAGAATGGCCAAGGAACCTCGGGTTCCCACCAGAAAAGTAAAAGAGGTGAACAGGCCCCTCTAGGAAAAACCAATGTGCCTATTGCAAGCAGACTGGGCACTGGAAAAAGGAGTGCCCACTACTGCCANAAGAAAAGTCAGAAAACAAAAAGGTCCTCACCCTGCCCGCAACGGAGGAGCCTGATGATTGACGGGGCCAGGGCTCCCTCGCTCTTGGCCCCCAGGANCCCATGGTAACTGCTACAGTGGGGGGCCAGCCTGTACGTTTCCTAGTAGACACCGGGGCGGAGCACTCGGTACTGCAGACTCCCTTGGGCAGTGTCTCAAATAAAAAAATGACTGTACAAAGGGCAACTGGAGCTATTCAAGAATATCCTGTCACACGCTCCCGAGAAGTAAACTTGGGACAGAAAAGAGTGACACACTCTTTTCTNGTGGTTCCAGAGTGTCCTTTTCCTCTCCTTGGACGAGACCTGCTCCATAAGTTACAGGCCTCAATCTCCTTTTCAGCTCAGCAGGCTCATCTCACACTAGGAAATGCAACTTCCCCCACTGCCCAACTCTTGCTAACTACCCCTCTGTCAGAAGAATACCTTCTGGTTTCACCATCACAATCACCGGAGGAGAATACTAATACTCTTTTGTTGGACNTACAGACACTTTTTCCCCGAGTTTGGGCCGAGTCAAACCCTCCCGGACTGGCTAAACACCATCCGCCAGTGGTTGTAGAACTCTTGGCCACTGCCATACCGGTCCAGGTAAAGCAATACCCCATGAGTCAGCAGGCTAGAGAGGNGATTAATCCCCACATTCAATGACTGTTACAAGCTGGCATACTTACACCATGTCAGTCGGCCTGGAACACNCCATTTTTGCCGGTCCAGAAACCTGGAACAAATGATTACCGGCCGGTACAAGACTTAAGGGAAGTTAATAAATGGACTGTTACTGTCCATCCAACCGTCCCTAATCCTTATACTCTACTCAGCCTGCTCCCACCAGAACATACAGTATACACTGTCCTTGACCTGAAAGATGCTTTCTTTGCTATTCCTCTGGCCCCCAAAAGCCAGCCGATTTTTGCATTTGAATGGACAGATCCAAGATCAGGAGACACTACCCAACTGACTTGGACTCAGTTACCTCAGGGTTTTAAAAATTCCCCCACCCTTTTTGGGGAGGCTCTTCGGCAAGATCTTATACCTTCCGAGCTAGTCACCCTAACTGTACTCTTCTTCAGTATGTAGATGATATTTTAATAGCTACTGAAACTATGGACAGTTGTCTACAACACACGAGGGACCTGCTCTACCTCCTTCAGGAGCTCGGGTATGGAGTCTCAGCCAAAAAGGCCCAGCTTTGTCTTCCCAGAGTGTCCTACCTGGGGTACGAGATAAACCAAGGAAAAAGGGCACTCACCAGTGCCCGGAAAGAAGCCATCCTGCGAATCCCCACTCCCGCCACCAAGAGACGGGTACGCGAATTNCTGGGGGCCGTGGGATACTGTCGCCTCTGGATATCGGGGTTCGCGGAGATTGCAAAGCCCTTGTATACTGCTACAGGANGNAATGGCCCGCTAATTTGGACAGACACNGAAGAACAGGCTTTTCAAAACCTGAAAAAGGCATTAACTGAAGCCCCTGCTTTAGCCCTCCCTAATATCTCAAAGCCGTTTCACCTGTTTGTCCATGAAAGCCAGGGAGTTGCTAAAGAGGTGCTTACTCAGACTTTAAGACCCTGGAGACGCCCAGTGGCCTATTTATCTAAGAGGCTGGATCCTGTGGCCTCTGGATGGCCAAGTTGTCTGCGAGCCGTAGCGGCTACAGCAAGCCTAGTCCAAGAAGNTGATAAGTTAACTCTAGGCCAAAATTTAACCCTTACAGCTCCTCATGCCGTAGAGACCTTACTACGAAGTGCTTCTGGCAAATGGATGTCAAATGCTCGCATCTTGCAGTATCAGAGTTTACTGTTAGATCAGCCTCGTTTGACTTTCTCTCCCACAAGGTGTTTNAATCCAGCTACACTACTTCCTGACCCAGACTCCACTATTCCTGCTCATGACTGTCAAGAACTGTTAGAAACTACCGAAACTGGCCGACCTGATCTTCAAGATGTGCCCCTAGAAAAGGCGGATGCCGCCGTGTTCACAGACGGTAGCAGCTTCCTCGAGCAGGGAGTACGAAAAGCCGGTGCAGCTGTTACCACGGAGACAGATGTGTTGTAGGCTCAGGCTTTACCAGCGAACACCTCAGCGCAAAAGGCTGAATTGATCGCCCTCACTCAGGCTCTCCGATGGGGTAAGGATAAACGTATTAACATTTACACTGACAGCAGGTACGCCTTTGCTACTGTGCATGTACATGGAGCCATCTACCAGGAANGCGGGCTACTCACCTCAGCAGGAAAGGCTATCAAAAACAAAGAAGAAATTCTAGCCCTGCTTGAAGCCGTGTGGCTCCCTCAGCAGGTAGCTGTGATCCACTGCAAAGGACATCAAAAAGAAAACACGGCCGTTGCCCGTAGTAACCAGAAAGCTGATTCAGCAGCTCAGGTCGCAGCGNGACTTTCAGTCACGCCTCTAAACTTGCTGCCCACAGTCTCCTTTCCACAGCCAGATCTGCCTGACAATCCCGTATACTCAACAAAANAAAAAAAACTGGCTTCAGATCTCAGAGCCAATAAAAATCAGGAAAGTTAGTAGATTCTTCCTGACTCTAGAATCTTCATACCCCGAACTCTTAAAGAAACTTTAATCAGTCACCTACAGTCTACCACCCATTTAAGAAGAGCAAAGCTACCTCAGCTCCTCCGGAGCCATTTTAAGATCCCCCGTCTTCAAAGCCTAACAGATCAAGCAGCTCTCCGGTGCACAACCTGCGCCCAGGTAAATGCCAAGCAAGGTCCTAAACCCAGCCCAGGCCACCGTCTCCGAAAAAACTCGCCAGGAGAAAAGTGGGAAATTGACTTTACAGAAGTAAAACCACACCGGGCTAAGTACAAATACCTTCTAGTACTAGTAGACACCTTCTCCGGATGGACTGAGGCATTTGCTACCGAAAACGAAACCGCCAACACGGTAGTTAAGTTTTTACTCAATGAAATCATCCCTCGATATAGGCTGCCTGCTGCCATAGGGTCTGATAATGGACCGGCCTTCACCTCGCCCATAGCTCAGTCAGTCAGTAAGGCGTTAAACATTCAACGGAAGCTCCATTGTGCCTATCGACCCCAGAGCTCCGGGCAGGTAGAACGCATGAACCGCACCCTAAAAAACACTCTTACAAAATTAATCTTAAAAACCGGTGNAAATTAGGTAAGTCTCCTTCCTTTAGCCCTACTTAGAGTAAGGTGCACCCCTTACCAGGCTAGGTTCTCACCTTTTGAAATCATGTATAGGAAGGCGCCGCCTATCTTGCCTAAGCTAAGAGATGCCNAATTAGCAGAAATATCACAAGCTAATTTATTACAGTACCTACAGTCTCTCCAACAGGTACAAGATATCATCCTGCCACTTGTTCGAGGAGCCCATCCCAATCCAATTCCTGACCAGACGGGGTCCTGCCATTCGTTCCAGCCAGGAGACCTAGTGTTTGTTAAAAAGTTCCAGAAAGAAGGACTCACTCCTGCTTAGAAAAGACCTCACACCGTCATCCTCACGACGCCAACGGCTCTGAAGGTGGACGGCATTCCTGCTTAGATTCATCACTCCCGCATCAAAAAGGCCAACAGAGCCCAACTAAAAACATAGGTCCCCAGGCCTAGGTCAGGCCCCTTAAAACTGCGCCTAAGTCAGGTGAAGCCATTAGATTNATTCTTTTTATCTACCTCACTTGTTTGTTTTTGCCCGTTACGTCCTCTGTGCCTTCCTACTCCTTTCTCCTCACCTCTTTCACAACAGGACGTGTATTTGCAAACACCACTTGGAAGGCCGGTACCTCCAAGGAAGTCTCCTTTGCAGTTGATTTATGTGTACTGTTCCCAAAGCCAGCCCGTACCCACGAAGAGCAACACAATCTGCCAGTCCCAGGAGCAGGAAGTGTCGACCTTGCAGCAAGATTCGGACACTCCGGGAGCCAAACTAGATGTGGAAGCTCCAAAGGTGCAGAAAAAGGACTCCAAAATGTTGACTTTTACCTCTGTCCTAGAAATCACCCTGACGCTAGCTGTCGAGATACTTATCAGTTTTTCTGCCCTGATTAGACATGTGTAACTTTAGCCACCTACTCTAAGAGATCAACCAGATCTTCAACTCTTTCCATAAGTCGTGCTTCTCATCCTAAATTATGTACTAGAAAAAATTGTAATCCTCTTACTATAACTGTCCATGACCCTAATTCAACTCAATAGTATCATGGCATGTCATGAAGATTAAGATTTTATATCCCAGGATTTGATGTTAGGACTATGTTCACCATCCAAAANAAAACCCTGGTCTCATGGAGCCCACCCAAGCCAATCGGGCCTTTAACTGATCTAGGTGACCCTATGTTCCAGAAACACCCTGACAAAGTTGATTTAACTGTTCCTCCACCATTCTTAGTTCCTAAGCCCCAGCTACAANGACANCATCTTCAACCCAGCCTGATGTCTATACTAGGTGGAGTACATCATCTCCTTAACCTCACCCAGCCTAAACTAGCCCAAGATTGTTGGCTATGTTTAAAAGCAAAACCCCCTTATTATGTAGGATTAGGAGTAGAAGCCACACTTAAANGTGGCCCTCTATCCTGTCATACACGACCCCGTGCTCTCACACTAGGAGATGTGTCTGGAAACGCTTCCTGTCTGATTAGTACCGGGTATAACTTATCTGCTTCTCCTTTTCAGGCTATTTGTAATCAGTCCCTGCTTACTTCCATAAGCACCTCAGTCTCTTACCAAGCGCCTAACAATACCTGGTTGGCCTGCACCTCAGGTCTCACTCGCTGCATTAATGGAACTGAACCAGGACCTCTCTTGTGCGTGTTAGTTCATGTNCTTCCCCAGGTATACGTGTACAGTGGACCAGAAGGACAACTCCTCATCGCTCCCCCGGAATTACATCCCAGGTTGCGCCGAGCTGCCCCACTNCTGGTTCCCCTCTTGGCCGGTCTTAGCATAGCTGGATCAGCAGCCATTGGTACGGCTGCCCTGGTTCAAGGAGAAACTGGACTAATGTCCCTGTCTCAACAGGTGGATGCTGATTTAAGTAACCTCCAGTCTGCCATAGATATACTACATTCCCAGGTAGAGTCTCTGGCTGAAGTAGTNCTTCAAAACCGCCGAGGCTTAGATCTGCTATTCCTCTCTCAAGGAGGATTATGCGCAGCTCTAGGAGAAAGCTGTTGCTTCTACGCCAATCAATCTGGAGTCATAAAAGATACACTCCAAAAAGTGCGAGAAAATCTAGATAGGCGCCAACAAGAACGAGAAAATAACATCCCCTGGTATCAAAGCATGTTCAACTGGAACCCATGGCTAACTACTCTAATCACTAAGTTAGCCGGACCCCTCCCCATCCTACTATTAAGTCTAATTTTTGGGCCTTGTATATTAAATTAGTTTCTTAATTTTGTAAAACAACGCATAGCTTCTGTCAAACTTATGTATCTTAAGACTCAATATAACCCCCTTGTTATAACTGAGGAATCAACGATTTGATTCCCCAAAAACACAAGTGGGGAAATGAAATGCCTAACGTTGTTTTTACTCTAACTNGTTACTTTGAATTTTGTCCTGCTTGTCTCTTTAATC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| HERVS71 | RAMOSA1 | 460 | 473 | - | 25.64 | GAGAGAGAGAGAGA |
| HERVS71 | RAMOSA1 | 462 | 475 | - | 25.64 | GAGAGAGAGAGAGA |
| HERVS71 | RAMOSA1 | 464 | 477 | - | 25.64 | GAGAGAGAGAGAGA |
| HERVS71 | BPC1 | 470 | 493 | - | 24.94 | ATGAGAGATAGAAAAAGAGAGAGA |
| HERVS71 | BPC5 | 463 | 492 | - | 23.33 | TGAGAGATAGAAAAAGAGAGAGAGAGAGAG |
| HERVS71 | RAMOSA1 | 466 | 479 | - | 22.89 | AAGAGAGAGAGAGA |
| HERVS71 | RAMOSA1 | 468 | 481 | - | 19.57 | AAAAGAGAGAGAGA |
| HERVS71 | ZNF282 | 2750 | 2764 | + | 18.79 | CTTTCCCTCTACCCG |
| HERVS71 | Bach1::Mafk | 4018 | 4029 | + | 18.70 | CATGAGTCAGCA |
| HERVS71 | Clamp | 460 | 473 | - | 18.41 | GAGAGAGAGAGAGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
