HERVK3
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000195 |
|---|---|
| TE superfamily | ERV2 |
| TE class | LTR |
| Species | Simiiformes |
| Length | 7202 |
| Kimura value | 9.82 |
| Tau index | 1.0000 |
| Description | Internal region of HERVK endogenous retrovirus, HERVK3 subfamily |
| Comment | The associated long terminal repeat is LTR3, and has 6 bp TSDs. |
| Sequence |
AGTGGCGTCCGAACACAGGGACTTCGAGGACGTGAACGAAGAAGGTCTGCTGGAGCAGAGGAACTGAAATTGACAAGGCGAACGGGGACCCCGGGACGAGTCTGCCGGCAGCGGATATAAGGTCAGTGCCCTAAAGAGGTACTGGGAGCAATATAAGGTCAGTGCCCTAAAGAGGTACTGGGAACGGGAAGTTTTCTGAATCAGNGGTAACATGGGGCAGAATTTGTCTATTGAAGAAAAACATTATCGTGCAGTTGCTTAAAGTTCTGTTGAGACAGTCTGGNGCTCAGGTTAGTTCNCAGACACTAACTAAGATGCCGCAGGAGGTTATTACGCATAACCCATGGTTTCCACAGGCAGGCACTCTTGATGTGGAAAATTGGGACAGAGCAGGAGAAGGATTAAAACGGGCTCATCAAAAAGGTCTTAAAGTTGATTCTTCTGTTTTCTCCACTTGGAGTTTAGTTCGTACTGTNCTTCTGCCATTATCTCCTTNTTATTCTGCNGGACAGCAGGAGTCATGTTCTGAGTCTAAAAATCTGAAAGAATCTGTTGTCCCACCCACAGCTCCAATTGAAAATAAAAAACAGGAGAGGGAGGATAAAAATTGGCCTATACCGCCTCCTCCAGTTGCAGAAACATCTGTACCGCCTCCTTCGGTAGCAGAAATAGAGACCCCAATACAAAGAATTTTACGCTCTGCTGCCATAGCTGGAGAGCCCTTAGGACCTNTGCGCTTTTCCTATTTCCGTAAGGCCTGATCCAAATAATCCACAGCAGNTTATTCATGAACACACCCCACTAGAGTTTAAGTTGTTGAAGGAATTAAAAGCTAAGTGTGGTNAATAATGGCGTACAGAGCCCATTCACTTTAGGATTGCTAGAATCTGTGTTTGGTGCTATGCGTCTTCTACCCTTTGATGTAAAACACTTGGCNCGAACTTGCTTGTCTGCTAGTGCATATCTGACATGGAATTTAAATTGGCAAGAAATGTGTGCAGACCAGGCTAGACAGAACCGTGCTGCTGGACACGGAGACATTACAGAGGATATGCTGTTAGGTAATGGCCCTTNATTCAGACCTGGAACGTCAAATGGCACTCCCAGACGCTGCTTATCAGCAGTGTGCACAGGCCGCTAAACGCGCCTGGGCCACAATTCCTGAAGAGGGAGTCCCAGTACAATCCTTTTTACATATCATGCAAGGGTCGCAGGAACCCTATGCGCAATTTCTTGCAAGATTACAAGAGGCAGTGAAGCGTCAGATTCCTCATACCGCTGCCGCAGAAATGCTAACCTTAACTCTAGCTTTTGAGAATGCAAACGCGGATTGTAAACGTGCACTGGCACCTGTGAGGTGTAAAAAAACTTGGGAAATTTTCTCAGAGCTTGTCAGGATGTAGGAACTGAGCTTCATCGCTCTGCAATGTTAGCNCAAGCAATGGCTAATTTAGCAGTTGACAAATCTAAAAGGAGCCAAGGGTCAAACCCTAAAATGGGAAAATGTTATAATTGTGGAAAAACTGGACATTTTAAAAAGGAATGCCGCCAGATCTCAGGACAGAAAGGACCTTACAATGCAGTNCCCCCCACCCCCGCGNNCCAGCGGAAAAAAACGCCAGGACTTTGTCCTCGCTGTAACAAAGGAAATCACTGGGCTAATCAGTGCCGCTCAAAATTTCATCAGAATGGCACCCCCCTGTCGGGAAACGAGANGGGGGCCTGGACCCGGGCCCCTCAAACAATGAGGGCATTCCCAGTCCAGACCACAACCCCGTTTCAGGGATGGGTTCCCGGAGGNACATTGATTCCCTCACCCCAGGAACACCAGGAAGTGCAGGATTAGATCTCCCCGCCAGAGAAAGAATTACGTTAGTTGGNGGAGACAAACCCACCAAAGTTCCCACTGGCATTTGGGGACCTTTACCAGCAGGATACATGGGACTAATTTTAGGCAAAAGCCGCCTTAACTTGCAAGGCATTACTGTAGTCCCAGGAGTNGTTGACTCCGATTATGAAGGAGAAATTCAAGTAGTTTTAATGTCACAAGATCTTTGGGTTTTTGAACCGGGAGAATATATTGCTCAATTATTGCTTATTCCCTGCAAATTACACCCTTCTCCACGAAAGGAGAAACGAGGAAATAAAGGGTTTGGGAGCACAACTACATGGGAAATCTATCTATCCNCAACCCATAGCCTCTAATAGACCCACCTGTGTAGTACAAATTAAAGGAAAGAAATTTTATGGGCTTATGGATACGGGAGCTGATGTGTCAGTAATATCTAGNAACGACTGGCCCCCATCCTGGCCCCTGCGATTAACTTCTACATCCCTAGTGGGAGTAGGAACAGCTCAAAGTGTTCAACAGAGTGCTGAGATTTTACCTTGTCTTGGTCCGGATGGACAGTCATGTACTTTTCAGCCTTATGTTGCAAATATAGCTATCAATTTATGGGGTCGAGACTTACTTACAGCATGGGATATGAGACTTACAAATGAAAACTTTGATAACCCAGGATTTAAAATGTTGAAGGACATGGGATATCAGAGTGGAAAAGGTTTAGGGAAATTCCTACAAGGAAACCCTAACCCGATATCAGTAACTGGAAAAACAGATAGAAAAGGGCTAGGACGTCAGGATTTCTGACGGGGGTCATTGATATTTCTCCTCCGCCCACTGCCTTACCATTAGAATGGCTNAGTGACAAACCTGTGTGGGTGGATCAATGGCCCCTANCACAGGAGAAGCTAGNTCAACTTCATCNGCTAGTAAAAGAGCAATTGGATGCAGGACATATAGAGAAGAGTTNCAGCCCCTGGAATTCACCGGTGTTTGTTATTCCAAAAAAGTCCGGAAGATGGTGACTGCTGCATGATTTGAGAGCTATTAATGCACAAATTAAACCGATGGGTGCATTACAGCAAGGTCTGCCATCCCCAGCGGCCATTCCAAGAGACTGGCCTCTCGTAGTAATAGATCTTAAGGATTGTTTCTTTACTATACCNTTACACGAGAAGGATAAGCCTCGATTTGCCTTCTCTGTGCCTTCTATTAATCAAAGAGAACCTGTTTCTCGTTATCAATGGAAAGTTTTACCCCAAGGCATGCTTAACAGTCCTACGCTATGTCAGCATTTTGTAGGACGGGCATTAAAGGAGCCTCGGAATATGTTTCCCACTGCTTACATCATTCATTNTATGGATGATATTCTTTTGGCCGCTCCTACAGATCAAATCTTACATCAGTTATTCAGAGAAACAAAGCGGGCTTTGACTAAATGGAATCTCAAAATNGCTCCAGAGAAGGTGCAAACAACTTCCCCATACCANTACTTAGGAACTATTGTTACGGAGAGAAGTGTACGGCCTCAGAAAGTAGTTCTCCGTAAAGACAGGTTACAGACTTTAAATGATTTTCAACAATTATTAGGGGATATTAATTGGCTGCGCCCGATGCTAGGTATTGCTACCTATCAACTTACACATCTTTACCAAACCCTGCAAGGAGATTCTTCNTTAAATTCCCCGCGGCAACTNACTAAAGAGGCAGAAGCCGAGTTACGGCTTGTAGAGCAGATGCTTCAGCAGAGACATGCCTCNCGGCTACAGCCGCAAAAACCTTTGCTTTTGTTTATTCTTCCTACCCCCCACTCTCCAACAGGACTTTTGGGCCAGTTCATAGACAAGTCTGTAACAGTAATAGAATGGCTCTTTCTACCTAATCAGTCAAAACCTTGCAAGTTTATCTTTCTTTAATTACACAAATTGTGACTATGGGCAGGCATAGGTCAAAAATGCTTACGGGATATGATCCNGACAAAATTATTGTTCCCTTAGACTCCCAGCAACAGGCCGCAGCNTGGGAAATGTCGACTGCNTGGCAAATCGCTTTCGCAGACTTCGTGGGAATAATAGATAACCACTATCCCTCAGACAAAATTTTGCAGTTTTATAAAGTCCATTCTTTCATTCTTCCTGTGATTACTCATCACAAGCCTATTCCAGGTGGACAGACTTATTTTACTGATGGCTCTTCCAAAGGTCGTGCAGCTATCTATGGACCTAAACATACTCAAACAATAATGACCTCTGGGGTTTCAGCTCAACGCTCAGAGCTAATTGCAGTCATTCAGGTTTTACAGCTCACAGCTTCAGATCCTATCAACATTGTCTGTGATTCAGCTTATGTTGTAAATGTAGCCAGTCGCATAGAAACTGCTACAATTAAAAGTACACTAGACCCAGAACTGCTTAATTTGTTTCTAAGACTTCANACAGCTATTCGCTCTCGTGCAGCTCCTTTTCATATTTCTCATATTCGCTCTCACACACAACTTCCTGGACCACTATCTCTAGGTAATGATAGAGCAGATAAACTGATTGGTTCTGTGTTTCAGCAAGCTCAAGCNTCTCNATGCGCTACTGCACCAAAACACCTCCGCCCTTACTCGCATGTTTCATCTGCCTCGCAGCCAAGCTAGGGCTATNGTACAAGCCTGTCCTACTTGCCAGCATGTCCCTGGNGCCGCACCTGTAGAAGGNTGTAACCCACGAGGTTTGGCTCCAAATGAAATCTGGCAAATGGATGTTACACACATAGCAGCCTTTGGCAAGCTTAGCTATGTTCTGTGANCTATAGACACTTATTCTCATATGCTGCATGCTACATGCCAAACAGGTGAGACAGCTGGTCATGTACGGCGACATTGTCTGTCATCATTTGCTCATATGGGGATACCTAAACAATTAAAAACTGACAATGGACCCGCTTATACTAGTCATGCTTTTCAAAATTTCTTACAGCTTTGGGCTATAACCCATAAAACAGGAATTCCTTATAATCCTAGAGGACAAGGCATTATAGAGCGGGCACATCAAACATTACAACGCATGTTGAAAAAACAAAAAGGGNGGTATAGGAGGCCAACTACCACCTCAATCAAAACTACATTTAGCCTTATTTACTTTAAATTTTTTNGACTCCTGGTACGGATGGTAAGACTCCAGCAGAAAGACATTGGCAAGTGTTAGAGGAAAAGAGGAAAGTTTATCCGAAAGTGTTATGGAAATCCCCGGAAGAAGNGACAATGGAAAGGTCCGGTGGATTTACTGACGTGGGGANGAGGGTATGCTTGTGTTTTTACAGGAGATGGACAAACCGTGTGGGTGCCCTCAAGGTGCGTGCGACCATGGAACGGGAGACTGGAGGAACCCAGGGTGGCCAACCATGGGCCCGGTCCCTCCGGTACGAGCCATGAGCCAGCTGAGCCTGAGTGCAAAGACGGAGAGAAGGCCGACCGGAGTCACGACGACATCAACCCCCATAACCTGGGGACAACTCAAGAAAACCACGCAGGAAGCTGAGAAACTACTGGAGCGTCAGGGNCAGGCAAAAACCCCTGATTCCATGTTCTTGGCCATGTTAGCCATAATGTCCTGTGCGGTATGTTTTCCCTGTGCAGAGGCAAAAACATATTGGGCATATGTTCCCAATCCCCCAGCAGTACGACCTGTACTTTGGAGTGACACTCCTCCTGAGATTTATCATGATCAGGGAGCGTGGGCTCCAGGACCCCTAACTCCCCTGACANTAGAACAGTTAGACTCTCAGAACAATGTCATCAATTATACCGCTCCACTGGAAGGACTCCCTTTGTGTATCACCACAAAGACGTCGCTCAGCCGTAGCTGTCTTACAATTCAAGCTCAAGCATGGTTGAGTCACTATGGAAAAGTCATGTACTTATTAGGTCTTGGTTCTATTAATGTAACTGGTGTGCTAACCAACCATTCCCGGCCCAATCGCCCTAATTGTGCTGACTATACGGAATGGATTCCCTTCAATAGTTCCTACCCCCCCTCNCGTGGACCCAGTGTCTTGGCCCACTGGCTAGAAAACAATCTATGTTAACTGGAGACATTGTGGATTGGGGACCTAAAGGTCAATTAGATGGAAAAGATGAAAATCAGAAATCATGGCACAAACTTCGCTGGCATTGGTGGCAAGCTTTTAATGCTTCTTCTTTATACNACACCGGGATCCAATCCCAGTCTGCCGCCCAGATTGCTTGGCATGGAGCAGGCTTTAGCCCGCCTCTTCCTCAGTGGCATTATCTAGGGAGGAAAGGACCAATTCAAGAGACGATATGGAAGGCAGCACTCCCATTTACGAATGGAGCATCTGGGTTNGGGATACTATCCAATAATAGCAATAGTAAGCGACACAGTCTTAATGTTACATTTGTAAAGAATATCACCACTCAATTTACGGTTTGTGTTTTTAATCCTTATGTCTTTTTGGCAGCTAAGAAGGACCAGCTCCAGGTAAACAATACCCAATTGACCTGTAAATCTTGCCAGTTATATCACTGCATTAATCATAGCACATTGCAAACACATAATATCTCTACTTTGATGATTTTGGGTCGCATCCCTGGGCTATGGATTCCTGTTAATCTGTCCGAGCCTTGGGCTGCCACACCTGCTTTGCATTTTGTGAAACTTCTTCTAACTCAGCTTACTCATCGTGTCCGTAGAGCCTTAGGCATGATAATTTTTGCTATTGTTTCCTTGGTCACACTAATAACTTCTGTTGTGATGTCCTCTGTAGCTTTGCATAGTTCTGTTCAAACAGCTCAGTACGTGGAGAACTGGACGCGCACAGCCGACCAAGCGTGGCTACTTCAGAATAAAATTAACACTGAGTTACAAACTGAAGTGGCAATGTTGAAATCCACGGTTCTATGGTTAGGGGAACAAGTACAAAGCTTGCAGTTGCAGCAGCAATTGCGTTGTCATTTTAATCACACTCATATTTGTGTAACCAACTTAGAATATAACCAAAGTGAGTATCCGTGGGACCTTGTGAAAGCCCATTTGCAGGGAGCTTTCACATCCAACATCACCTTTGATATTGGTGAATTACAAAACAAAATTCTTGATTTAAATAGGCAAACTCAAGAGTTTCAGCCTTCTTTAGAAGACTGGACCGAATTCCAGCAAGGCCTGGAGAGCCTCAACCCTTGGACCTATCTAAGGCACCACATTAACATCTTATATGTAGTTCTTGGAATAATGTTGTTTTGTCTCTGTCTTCTGTTCATAGTCTGTAAAATCGGATGGACCGCCAATCGGAGAATGAGAGCTGCCCAGCCTGGCCTTACATTCTTTCAATTAATNCATAAACAGAAAGGGGGATA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| HERVK3 | NR2F6 | 155 | 169 | + | 16.63 | AAGGTCAGTGCCCTA |
| HERVK3 | ELF1 | 1829 | 1837 | + | 16.58 | CAGGAAGTG |
| HERVK3 | NRL | 3130 | 3141 | - | 16.57 | AAAATGCTGACA |
| HERVK3 | klu | 1590 | 1600 | + | 16.33 | CCACCCCCGCG |
| HERVK3 | Ikzf3 | 1829 | 1837 | + | 16.18 | CAGGAAGTG |
| HERVK3 | HAT5 | 2086 | 2094 | - | 16.17 | CAATAATTG |
| HERVK3 | AT1G72740 | 1486 | 1496 | - | 16.12 | TTTTAGGGTTT |
| HERVK3 | ZNF382 | 6586 | 6609 | - | 16.10 | AGAGGACATCACAACAGAAGTTAT |
| HERVK3 | sta-1 | 7067 | 7075 | - | 16.04 | TTCCAAGAA |
| HERVK3 | NR2F1 | 119 | 133 | + | 16.04 | AAGGTCAGTGCCCTA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
