HERVK3
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000195 |
|---|---|
| TE superfamily | ERV2 |
| TE class | LTR |
| Species | Simiiformes |
| Length | 7202 |
| Kimura value | 9.82 |
| Tau index | 1.0000 |
| Description | Internal region of HERVK endogenous retrovirus, HERVK3 subfamily |
| Comment | The associated long terminal repeat is LTR3, and has 6 bp TSDs. |
| Sequence |
AGTGGCGTCCGAACACAGGGACTTCGAGGACGTGAACGAAGAAGGTCTGCTGGAGCAGAGGAACTGAAATTGACAAGGCGAACGGGGACCCCGGGACGAGTCTGCCGGCAGCGGATATAAGGTCAGTGCCCTAAAGAGGTACTGGGAGCAATATAAGGTCAGTGCCCTAAAGAGGTACTGGGAACGGGAAGTTTTCTGAATCAGNGGTAACATGGGGCAGAATTTGTCTATTGAAGAAAAACATTATCGTGCAGTTGCTTAAAGTTCTGTTGAGACAGTCTGGNGCTCAGGTTAGTTCNCAGACACTAACTAAGATGCCGCAGGAGGTTATTACGCATAACCCATGGTTTCCACAGGCAGGCACTCTTGATGTGGAAAATTGGGACAGAGCAGGAGAAGGATTAAAACGGGCTCATCAAAAAGGTCTTAAAGTTGATTCTTCTGTTTTCTCCACTTGGAGTTTAGTTCGTACTGTNCTTCTGCCATTATCTCCTTNTTATTCTGCNGGACAGCAGGAGTCATGTTCTGAGTCTAAAAATCTGAAAGAATCTGTTGTCCCACCCACAGCTCCAATTGAAAATAAAAAACAGGAGAGGGAGGATAAAAATTGGCCTATACCGCCTCCTCCAGTTGCAGAAACATCTGTACCGCCTCCTTCGGTAGCAGAAATAGAGACCCCAATACAAAGAATTTTACGCTCTGCTGCCATAGCTGGAGAGCCCTTAGGACCTNTGCGCTTTTCCTATTTCCGTAAGGCCTGATCCAAATAATCCACAGCAGNTTATTCATGAACACACCCCACTAGAGTTTAAGTTGTTGAAGGAATTAAAAGCTAAGTGTGGTNAATAATGGCGTACAGAGCCCATTCACTTTAGGATTGCTAGAATCTGTGTTTGGTGCTATGCGTCTTCTACCCTTTGATGTAAAACACTTGGCNCGAACTTGCTTGTCTGCTAGTGCATATCTGACATGGAATTTAAATTGGCAAGAAATGTGTGCAGACCAGGCTAGACAGAACCGTGCTGCTGGACACGGAGACATTACAGAGGATATGCTGTTAGGTAATGGCCCTTNATTCAGACCTGGAACGTCAAATGGCACTCCCAGACGCTGCTTATCAGCAGTGTGCACAGGCCGCTAAACGCGCCTGGGCCACAATTCCTGAAGAGGGAGTCCCAGTACAATCCTTTTTACATATCATGCAAGGGTCGCAGGAACCCTATGCGCAATTTCTTGCAAGATTACAAGAGGCAGTGAAGCGTCAGATTCCTCATACCGCTGCCGCAGAAATGCTAACCTTAACTCTAGCTTTTGAGAATGCAAACGCGGATTGTAAACGTGCACTGGCACCTGTGAGGTGTAAAAAAACTTGGGAAATTTTCTCAGAGCTTGTCAGGATGTAGGAACTGAGCTTCATCGCTCTGCAATGTTAGCNCAAGCAATGGCTAATTTAGCAGTTGACAAATCTAAAAGGAGCCAAGGGTCAAACCCTAAAATGGGAAAATGTTATAATTGTGGAAAAACTGGACATTTTAAAAAGGAATGCCGCCAGATCTCAGGACAGAAAGGACCTTACAATGCAGTNCCCCCCACCCCCGCGNNCCAGCGGAAAAAAACGCCAGGACTTTGTCCTCGCTGTAACAAAGGAAATCACTGGGCTAATCAGTGCCGCTCAAAATTTCATCAGAATGGCACCCCCCTGTCGGGAAACGAGANGGGGGCCTGGACCCGGGCCCCTCAAACAATGAGGGCATTCCCAGTCCAGACCACAACCCCGTTTCAGGGATGGGTTCCCGGAGGNACATTGATTCCCTCACCCCAGGAACACCAGGAAGTGCAGGATTAGATCTCCCCGCCAGAGAAAGAATTACGTTAGTTGGNGGAGACAAACCCACCAAAGTTCCCACTGGCATTTGGGGACCTTTACCAGCAGGATACATGGGACTAATTTTAGGCAAAAGCCGCCTTAACTTGCAAGGCATTACTGTAGTCCCAGGAGTNGTTGACTCCGATTATGAAGGAGAAATTCAAGTAGTTTTAATGTCACAAGATCTTTGGGTTTTTGAACCGGGAGAATATATTGCTCAATTATTGCTTATTCCCTGCAAATTACACCCTTCTCCACGAAAGGAGAAACGAGGAAATAAAGGGTTTGGGAGCACAACTACATGGGAAATCTATCTATCCNCAACCCATAGCCTCTAATAGACCCACCTGTGTAGTACAAATTAAAGGAAAGAAATTTTATGGGCTTATGGATACGGGAGCTGATGTGTCAGTAATATCTAGNAACGACTGGCCCCCATCCTGGCCCCTGCGATTAACTTCTACATCCCTAGTGGGAGTAGGAACAGCTCAAAGTGTTCAACAGAGTGCTGAGATTTTACCTTGTCTTGGTCCGGATGGACAGTCATGTACTTTTCAGCCTTATGTTGCAAATATAGCTATCAATTTATGGGGTCGAGACTTACTTACAGCATGGGATATGAGACTTACAAATGAAAACTTTGATAACCCAGGATTTAAAATGTTGAAGGACATGGGATATCAGAGTGGAAAAGGTTTAGGGAAATTCCTACAAGGAAACCCTAACCCGATATCAGTAACTGGAAAAACAGATAGAAAAGGGCTAGGACGTCAGGATTTCTGACGGGGGTCATTGATATTTCTCCTCCGCCCACTGCCTTACCATTAGAATGGCTNAGTGACAAACCTGTGTGGGTGGATCAATGGCCCCTANCACAGGAGAAGCTAGNTCAACTTCATCNGCTAGTAAAAGAGCAATTGGATGCAGGACATATAGAGAAGAGTTNCAGCCCCTGGAATTCACCGGTGTTTGTTATTCCAAAAAAGTCCGGAAGATGGTGACTGCTGCATGATTTGAGAGCTATTAATGCACAAATTAAACCGATGGGTGCATTACAGCAAGGTCTGCCATCCCCAGCGGCCATTCCAAGAGACTGGCCTCTCGTAGTAATAGATCTTAAGGATTGTTTCTTTACTATACCNTTACACGAGAAGGATAAGCCTCGATTTGCCTTCTCTGTGCCTTCTATTAATCAAAGAGAACCTGTTTCTCGTTATCAATGGAAAGTTTTACCCCAAGGCATGCTTAACAGTCCTACGCTATGTCAGCATTTTGTAGGACGGGCATTAAAGGAGCCTCGGAATATGTTTCCCACTGCTTACATCATTCATTNTATGGATGATATTCTTTTGGCCGCTCCTACAGATCAAATCTTACATCAGTTATTCAGAGAAACAAAGCGGGCTTTGACTAAATGGAATCTCAAAATNGCTCCAGAGAAGGTGCAAACAACTTCCCCATACCANTACTTAGGAACTATTGTTACGGAGAGAAGTGTACGGCCTCAGAAAGTAGTTCTCCGTAAAGACAGGTTACAGACTTTAAATGATTTTCAACAATTATTAGGGGATATTAATTGGCTGCGCCCGATGCTAGGTATTGCTACCTATCAACTTACACATCTTTACCAAACCCTGCAAGGAGATTCTTCNTTAAATTCCCCGCGGCAACTNACTAAAGAGGCAGAAGCCGAGTTACGGCTTGTAGAGCAGATGCTTCAGCAGAGACATGCCTCNCGGCTACAGCCGCAAAAACCTTTGCTTTTGTTTATTCTTCCTACCCCCCACTCTCCAACAGGACTTTTGGGCCAGTTCATAGACAAGTCTGTAACAGTAATAGAATGGCTCTTTCTACCTAATCAGTCAAAACCTTGCAAGTTTATCTTTCTTTAATTACACAAATTGTGACTATGGGCAGGCATAGGTCAAAAATGCTTACGGGATATGATCCNGACAAAATTATTGTTCCCTTAGACTCCCAGCAACAGGCCGCAGCNTGGGAAATGTCGACTGCNTGGCAAATCGCTTTCGCAGACTTCGTGGGAATAATAGATAACCACTATCCCTCAGACAAAATTTTGCAGTTTTATAAAGTCCATTCTTTCATTCTTCCTGTGATTACTCATCACAAGCCTATTCCAGGTGGACAGACTTATTTTACTGATGGCTCTTCCAAAGGTCGTGCAGCTATCTATGGACCTAAACATACTCAAACAATAATGACCTCTGGGGTTTCAGCTCAACGCTCAGAGCTAATTGCAGTCATTCAGGTTTTACAGCTCACAGCTTCAGATCCTATCAACATTGTCTGTGATTCAGCTTATGTTGTAAATGTAGCCAGTCGCATAGAAACTGCTACAATTAAAAGTACACTAGACCCAGAACTGCTTAATTTGTTTCTAAGACTTCANACAGCTATTCGCTCTCGTGCAGCTCCTTTTCATATTTCTCATATTCGCTCTCACACACAACTTCCTGGACCACTATCTCTAGGTAATGATAGAGCAGATAAACTGATTGGTTCTGTGTTTCAGCAAGCTCAAGCNTCTCNATGCGCTACTGCACCAAAACACCTCCGCCCTTACTCGCATGTTTCATCTGCCTCGCAGCCAAGCTAGGGCTATNGTACAAGCCTGTCCTACTTGCCAGCATGTCCCTGGNGCCGCACCTGTAGAAGGNTGTAACCCACGAGGTTTGGCTCCAAATGAAATCTGGCAAATGGATGTTACACACATAGCAGCCTTTGGCAAGCTTAGCTATGTTCTGTGANCTATAGACACTTATTCTCATATGCTGCATGCTACATGCCAAACAGGTGAGACAGCTGGTCATGTACGGCGACATTGTCTGTCATCATTTGCTCATATGGGGATACCTAAACAATTAAAAACTGACAATGGACCCGCTTATACTAGTCATGCTTTTCAAAATTTCTTACAGCTTTGGGCTATAACCCATAAAACAGGAATTCCTTATAATCCTAGAGGACAAGGCATTATAGAGCGGGCACATCAAACATTACAACGCATGTTGAAAAAACAAAAAGGGNGGTATAGGAGGCCAACTACCACCTCAATCAAAACTACATTTAGCCTTATTTACTTTAAATTTTTTNGACTCCTGGTACGGATGGTAAGACTCCAGCAGAAAGACATTGGCAAGTGTTAGAGGAAAAGAGGAAAGTTTATCCGAAAGTGTTATGGAAATCCCCGGAAGAAGNGACAATGGAAAGGTCCGGTGGATTTACTGACGTGGGGANGAGGGTATGCTTGTGTTTTTACAGGAGATGGACAAACCGTGTGGGTGCCCTCAAGGTGCGTGCGACCATGGAACGGGAGACTGGAGGAACCCAGGGTGGCCAACCATGGGCCCGGTCCCTCCGGTACGAGCCATGAGCCAGCTGAGCCTGAGTGCAAAGACGGAGAGAAGGCCGACCGGAGTCACGACGACATCAACCCCCATAACCTGGGGACAACTCAAGAAAACCACGCAGGAAGCTGAGAAACTACTGGAGCGTCAGGGNCAGGCAAAAACCCCTGATTCCATGTTCTTGGCCATGTTAGCCATAATGTCCTGTGCGGTATGTTTTCCCTGTGCAGAGGCAAAAACATATTGGGCATATGTTCCCAATCCCCCAGCAGTACGACCTGTACTTTGGAGTGACACTCCTCCTGAGATTTATCATGATCAGGGAGCGTGGGCTCCAGGACCCCTAACTCCCCTGACANTAGAACAGTTAGACTCTCAGAACAATGTCATCAATTATACCGCTCCACTGGAAGGACTCCCTTTGTGTATCACCACAAAGACGTCGCTCAGCCGTAGCTGTCTTACAATTCAAGCTCAAGCATGGTTGAGTCACTATGGAAAAGTCATGTACTTATTAGGTCTTGGTTCTATTAATGTAACTGGTGTGCTAACCAACCATTCCCGGCCCAATCGCCCTAATTGTGCTGACTATACGGAATGGATTCCCTTCAATAGTTCCTACCCCCCCTCNCGTGGACCCAGTGTCTTGGCCCACTGGCTAGAAAACAATCTATGTTAACTGGAGACATTGTGGATTGGGGACCTAAAGGTCAATTAGATGGAAAAGATGAAAATCAGAAATCATGGCACAAACTTCGCTGGCATTGGTGGCAAGCTTTTAATGCTTCTTCTTTATACNACACCGGGATCCAATCCCAGTCTGCCGCCCAGATTGCTTGGCATGGAGCAGGCTTTAGCCCGCCTCTTCCTCAGTGGCATTATCTAGGGAGGAAAGGACCAATTCAAGAGACGATATGGAAGGCAGCACTCCCATTTACGAATGGAGCATCTGGGTTNGGGATACTATCCAATAATAGCAATAGTAAGCGACACAGTCTTAATGTTACATTTGTAAAGAATATCACCACTCAATTTACGGTTTGTGTTTTTAATCCTTATGTCTTTTTGGCAGCTAAGAAGGACCAGCTCCAGGTAAACAATACCCAATTGACCTGTAAATCTTGCCAGTTATATCACTGCATTAATCATAGCACATTGCAAACACATAATATCTCTACTTTGATGATTTTGGGTCGCATCCCTGGGCTATGGATTCCTGTTAATCTGTCCGAGCCTTGGGCTGCCACACCTGCTTTGCATTTTGTGAAACTTCTTCTAACTCAGCTTACTCATCGTGTCCGTAGAGCCTTAGGCATGATAATTTTTGCTATTGTTTCCTTGGTCACACTAATAACTTCTGTTGTGATGTCCTCTGTAGCTTTGCATAGTTCTGTTCAAACAGCTCAGTACGTGGAGAACTGGACGCGCACAGCCGACCAAGCGTGGCTACTTCAGAATAAAATTAACACTGAGTTACAAACTGAAGTGGCAATGTTGAAATCCACGGTTCTATGGTTAGGGGAACAAGTACAAAGCTTGCAGTTGCAGCAGCAATTGCGTTGTCATTTTAATCACACTCATATTTGTGTAACCAACTTAGAATATAACCAAAGTGAGTATCCGTGGGACCTTGTGAAAGCCCATTTGCAGGGAGCTTTCACATCCAACATCACCTTTGATATTGGTGAATTACAAAACAAAATTCTTGATTTAAATAGGCAAACTCAAGAGTTTCAGCCTTCTTTAGAAGACTGGACCGAATTCCAGCAAGGCCTGGAGAGCCTCAACCCTTGGACCTATCTAAGGCACCACATTAACATCTTATATGTAGTTCTTGGAATAATGTTGTTTTGTCTCTGTCTTCTGTTCATAGTCTGTAAAATCGGATGGACCGCCAATCGGAGAATGAGAGCTGCCCAGCCTGGCCTTACATTCTTTCAATTAATNCATAAACAGAAAGGGGGATA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| HERVK3 | DAL81 | 313 | 331 | + | -52.00 | AGATGCCGCAGGAGGTTAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
