HERV4_I
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000172 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Haplorrhini |
| Length | 6539 |
| Kimura value | 11.78 |
| Tau index | 0.9815 |
| Description | Internal region of an ERV1 endogenous retrovirus, HERV4 subfamily |
| Comment | Associated long terminal repeat includes MER51A. |
| Sequence |
TATTTTGGCGAGCCAGCCAGGAGGTAAGCCCAAAGTTTGGGATTTATTTTTCTCTTTTTCCTCTTTCTCTCTCTCTTTTCCTTTCCAACTCGGGACCCTCGGTGGACAGCGCCTAAGCACGGAGGCAACTGCAGGTTTCTGGCCGGGGCCACTCTCCGGTGAAACTGAAAGGTTTCCGTGTGGAAGCGCCTGACCGCCACCGCCCGGTTCGGGTGAGGGACCTGAGTCCTTTTCTTTTTCAGTCTTTCAGCGGCCGTTTCCTAGTAGCTCCTTGGTAATTGAGGGCAACTGGCCGGGGCCACTCTCCGGTGTTACCTGAAGGCCAAGGAGTGAACGGGGATAGCTGCCCTGCCCGGAAGGGGGAAGGACTCTTTTCTATCTTTTCCGGTTATAGTCCCTGATCCCTACGTGTGACGCAATTGGCAGCGGCAGCTCGTCCAGGGCGAACTCACACACGTTTCAGGCGACTTAAACCTTCTTTTCTTATGCTAAATTCTTCCCTTCCCCTACTCGACTGGCTAAGGACAAGTCAGAGGGTCCGGGCATGTCGTAGATGGTCTGTGTGAGTCATGGGGAGGGGATTCATGAAAGGGAATTTATGTACAATTTAATCTTGCCTAAATTTAGAGAGTTAAAGGATTGTTTTAAGTGGGATAGGAAAAAAAATCCAAAGGTTTGACTGAAAGTTAATTCTAGAAGTCGAGGCCTTCATCCAGGGACAAGAGGGAAAGCTCATAGTAGGTCATCAGTGGTGGAGGGAACCATTCCAAAGCGGTGCCGGCACCCATCTAAGGTCAGAGACGTCTGACAGACTAAGACGGGGCCCTAAAGGGGGGACGCCCCCGGGGACCCCAGTCNGGGCCCAGAATTTTTCCAGGGGGATGCCCCGGGTAAAATTTGGGTCACCTAATGAGCCCTCCACTTTTCAAAGTCCTCTTCTCTTTTCCAGACCACTATGGGCAACTCTCCATCTATTCCACCTGATTCCACTATGGGCAACTCTCCATCTATTCCACCTGATTCCCCGCTTGGCTGCATCCTCAACCATTGGAATCAATTTGACCCTGACAATCTAAGGAGAAAACGTNTGATTTTTTTCTGCAATACTGTTTGGCCCCANTATNAGCTGNNCAGCCAGGAACAATGGGCGGTCAATGGTAGCCTTAATTATGACACCATCCTGCAATTAGACCTATTTTGCAAGAGGCAGGGCAAATGGTCAGAAATCCCATATGTACAGGCCTTCATGGCCCTATACCAAAACCCAACAATCTGCAAAACTCCCAGAACCCGCCCCCCAAAGGAAAGTCCTAAGGCAGAACTAGATATTGTAGATGACCCCCTTTTACAAGGGCCACCTGTCTCTCAGGGNGAACAGCAACCGCCCCCATATAGCCCCTTGCCAAGTGCTCCTGAGGCTAAAACCCAGGAGCAAACACCGGGGACCCTACTAAGTCCCCCTCACACTCGGAGGGGAACACCNTATTCAACTCTCCCTCCAGCCCTGCTACCCCTTAGGGAAGTAGCAGGAGCCGAGGGGCCAGTCCGAGTGCAGGCCCCCTTCTCTATAACTGATATACAACAATGTAAGGAAAAGCTAGGAAGCTATTCTGAGAACCCCGGGAAATTTGCAGATGGGTTCCAAACTTTGACCTTAGCCTTTGATCTCTCATGGAGAGATGTTCAATTCATTCTAGCAACCTGTTGCACCCCCTCGGAAAAGGAACGAATCTTTGAGGCCGCCCGCCGGGAAGCGGACGANTTATTCGCCCGAAACCCTCAGGGCAATCACCCGGGCCCAGACACAGTCCCCACTACTGATCCTAATTGGGACTATAACACCCCCGTGGGAATGAACAACCGGGCTAAATTTCTTGAGGCTCTCCTTGGAGGAATGAGAAAGGGAATAACTAAGGCAGTAAATTATGATAAAGTAAGGGAGGTTACACAAGGCAAGGAGGAAAATCCAGCCATGTTTTATGGCAGGCTGGAGGAAGCCTTTAAAAAATATACNAATCTGGACCCTTCCTCTCCCGAAGGCAAAATATTAATGGCACAGCATTTCATTAGCCAATCCGCCCCGGACATTAGACGTAAGCTCCAAAAGCTACAGATGGGGCCACAAACTAATCAAAATCAGCTTCTTGATACCGCCTTTATGGTGTATAACAATCGTGACCTGGAGGAAGGAAAAAGGGAACAGAGTAAAGAAAAACGGCAAGCCAAAATTATGGCAGCCATCATTGGCGATGCCCTGAATGCCCAAAGAGCGTCCAAGGGAAACCCGAAGGGCCATAAGGATAATGCCAGCAAAGGCTCTTGCTTCAAGTGCAAGAAAAATGGGCATTGGGCAAAGGACTGTACTAAGCCCCCGCCAGGCCCCTGCCGTCAATGCGAAGGCACCAGTCACGACCCCTGGCACTGGAGAATTGACTGCCCCCGCTCCCACCGAGGGGCTCAGTCAGTCAAAACTCTAGCAGTGCAAAAGGAGGAATTAGATGAAGACTGAAGGGGCCCGGGGCCTTCCTCACCGCCCCTGTCCAGGAACATCGTNATTACTACTGAGGAGCCCCGGGTAACTCTGGACGTCATGGGCACCCAAATTCAGTTTCTTTTTGATACAGGGGCAAATTACTCTGTCCTTACTGCTTATGCAGGAAAACTTTCCTCCCGGTCCACGAGTGTTATGGGAATGGAAGGAAAGCCACAAACAAGATTCTTTACTCCTCCTTTGACTTGTCAATTTGAGAAACAAATCTTCCAACAGGAATTTCTAGTAGTACCAAGCTGCCCAGTCCCCCTGTTGGGAAGAGATATTATGGTTAAAATAGGGGCACTGCTACAATTTAAGCACCGCCCGGCGAAATTGCTAATAGTCAGNAATGCAGACAATGTCCCAGACCACGTTAATAAACAGGTCAACCCGCTGGCATGGTATACTGGGAAACCGGGGAAGGCTAAAACGGCAGTGCCAGTCAAAATACAGCTTAAAGACCCCAGCTATTTTCCCAATCGAAAACAATACCCAATTAAGCTGGAAGCAAGAAAAGGCCTAGCACCCATAGTTGAGGTATTACTTACCCATGGACTCTTAAAACCCTGCAATTCTCCCTGCAATACCCCCATCTTACCCGTTCTAAAGCCTTCGGGGGAATACCGGNTAGTACAGGACCTCAGAATAATTAATGAGGCTGTTATCCCCGTCCACCCATTGGTGGCGGATCCATATACCCTCCTGGCTCAGGTGCCAGGGGATGCAAAATGGTTCTCAGTCCTAGACCTAAAAGATGCTTTCTTCTCCATTCCTCTGGCCCCAGAGTCCCAATACCTTTTTGCCTTTGAATGGGAAAATCCTAATACCAGAGAAAAACAACAATACACTTGGACAGTGCTCCCTCAGGGCTTTCGGGATAGCCCCCATTTCTTTGCCCGAGCCTTAGAGAGGGATCTGAGGGATCTGCAATTGGAGAATGGGAGTATACTCCAGTATGTGGATGACCTTCTTGTGTGTAGCCCAACCCAGGAGGCTTCTGACCAAAATACTATAAAAACTTTGAATTTCCTGGCAGACAGGGGATACAAAGTGTCCAAAAAGAAGGCTCAGATTACCCTCCAACGGGTCCAATATTTAGGGTATGTCTTAACACCCGGAGCCCGGCAAATATCCCCAGAACGAGTGCAAGCCATATGTGGTTTGGGGCCCCCCCACACCAAGCAGCAGCTTCGTTCTTTTTNGGGAATGGCCGGGTTTTGCAGAATATGGGTACCAAATTTTGGGCTCATAGCAAAGCCCCTNTATGAAGCAACAAGGGGGCCTGAAAATGAGCTAATGGAATGGACCCCGGAAATGAGGGAAGCCTTCGCCAAGTTAAAACAGGCTCTCACCCAGGCTCCCGCTCTTGGCATCCCAGACCTNACTAAGCCCTTCTCCTTGTATGTAGCAGAGAAGAAGGGCATAGCTGTGGGAGTGCTAGCCCAGAAATTAGGATCAGAACCCAGACCAACCGCCTACTTTTCAAAGAAGTTGGACGGAGTGGCCTCGGGGTGGCCAAGCTGCCTGCGGGCAATAGCAGCCACTGCTATTTTAGTGGAGGAAGCCACTAAAATCACCCTGGGTCAACCACTGGAAGTTCTAACCCCNCATCAGGTAAAGTCAGTCTTAGAGATAAAAGGACACATCTGGATGACGGGGGAAAGGTTAACCAAATACCAGGCCATGCTCCTAGACAATCCAGATGTAACCCTTAAAACCTGTAACACCTTGAATCCAGCTTCATTGCTGCCCACAGGCCCAATAACTGATCATTCCTGCGAGCAGGTCATCGCACACACATATGTTAGCCGGCCTGATTTAAAAGATCAGCCTCTCCCAGATTCTGAGGATGACTGGTTCACAGACGGCAGTAGTTTTGTGTCAAATGGGGAGCGCCGAGCTGGATATGCAATAGTAAATCACAACACCATTATTGAAGCCCAGCCACTGCCCCCTGGCACATCAGCACAAAAGGCTGAAATCATTGCTCTTACCCGAGCATTAATGTTGGGACAAGGGAAAAAGCTTAACATCTATACAGATTCTAAATATGCATTCCTTGTGGTTCATGCTCATGCTGCAATCTGGAAAGAAAGGGGACTACTAACTAGCAAACACTCCCCCATAAAGCATGGGCCTGAAATTCTTCAGCTATTGGAAGCAATACACCTGCCAAAGGCCGTAGCTATAATCCATTGTAGGGGGCATCAAAGGGACTTAACCCCTATAGCACAAGGGAACAGAAAGGCTGATAGAGAAGCCAAAGCCGCAGCCCTCAGGGTGCAATCCCAACAGATCCTAGCACTGCTTCCTTTCTATGATTCCCCAATAGAACCTGAATACACACCACAGGAAGAACAGTTAATAAAGGAGCAAGGGGGACAAAAACAAGGATCCTGGTGGTATATGGGATCAAAAGTATATCTCCCTCAAACAGCCCAATGGAGAGTTATAAAAACCCTGCATGACTCTTTCCATATGGGGAGAGATGCCACCCTGGCCATGGTAAACAGGCTCTTCATTGGGCCTAACTTAGCTTCGGTGGTTAAGCAGGTCTGTCAAGCCTGCTCACTGTGTGCACTTAACAACCCAGGAAACAAAATGCCTCCTCTAATAGAACCAGTCCAGAGGAGAGGAACTTACCCAGGGGAAGACTGGCAATTAGACTTCACCCATATGCCAGCTTGCAGAGGATACAAGTTTTTGCTAGTACTAATAGACACCTTTACTGGCTGGGTCGAAGCTTACCCTACCAGAACAGAGAAGGCTAATGAGGTTATAAAGGTTCTCTTAAAGGAAATAATCCCCCGGTTTGGGTTACCCCAGAGCCTCCAAAGTGATAACGGCCCGTCCTTTATCTCCCAAATAACTCAAGGGGTTGCTAAGGCTCTCGGAATCAAATACTATTTACATTCAGCATGGAGGCCTCAATCCTCCGGGAAAGTAGAAAGGGCTAATCAAACTCTAAAACGGGCGTTAGCTAAGCTATGTCAGGAAACATCAGAAACTTGGGTCAGCTTACTGCCCATAGCCCTCTTAAGGATCCGTAATNCCCCTAGAGCAAAAATTAATATGAGCCCATATGAAATGTTATACGGAAGGCCATTTTTAACTAATGATCTAATTACTGATCCAGAAACAGCCGGTTTAGTAAAATACCTAGTTAACCTGGGACAATTTCAGCAGGCTTTACAAAAGTTTGGAACTCAAAGGCTCCCCACACCGGGAACTAACCAGCAACCCAAAATCAGGCCAGGAGATAAGGTACTTGTTAAAACATGGAAGGAGGGATCACCTGCTCAACAATTACAACCCAAATGGAAGGGACCGTTTTCAGTGGTACTGGCCACGCCTTCTGCGGTCAAAGTACTAGGATTAGATAGTTGGATACATCTTTCCAGGGTCAAGCCTGCGATACCTGAAGCCCCGGACCTGGAACCTGAAGCTCCCATCAGCCACTACACCTGTGAACCTGTGGAAGACCTGAAGTACCTGTTTAAAAGACAGCCAAAAGATAAGTAAATGCCTACCAACTTTCCTTGGTGTCTTTGTTGCATAGTTACTGTAGGCTGGATAATAGTAGCCATTTTTANNNNTATTTTTGCAGTTTAATTGCCTTCTTCCAAACGGATGGAATCACTTCCTTTGTAATAATTAAGCAGAATGTTTTAATTCATCTCTATAACAAACATTCCTGACAGCATAGGTATCCACCCCCTGAAGTTCCCATTAAATCTTTTAACCAAATTCATTTCCTCTCGCCTAGAGACCATCAAGCTTCAGATGATCATGCGACAAGGNTTCCAGCCAGTTCCAGGTGAAGACACCACCCCTGGCCATCAAGAAGCTACCCTGTCTCCACTAGACAGAGCAGGGCGAGAGTTCCGTGATCCCCAATAGGTAGGGACTACGCCCCAAGTCAGCATGAAGCAGTTACAGAAGAAAGACCATCGGTCCCTCTGCCTCCCATAAAGATTTATGGGGATCACGTCTCTCAGGGGGGAGA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| HERV4_I | DREB2D | 191 | 204 | + | 16.73 | TGACCGCCACCGCC |
| HERV4_I | BPC1 | 52 | 75 | - | 16.70 | GAGAGAGAGAAAGAGGAAAAAGAG |
| HERV4_I | PLAG1 | 1386 | 1399 | - | 16.67 | GGGGCTATATGGGG |
| HERV4_I | TB1 | 3699 | 3707 | + | 16.64 | GGCCCCCCC |
| HERV4_I | Hnf1A | 1659 | 1668 | + | 16.49 | CCTTTGATCT |
| HERV4_I | DOF5.8 | 41 | 59 | + | 16.45 | GATTTATTTTTCTCTTTTT |
| HERV4_I | DOF3.4 | 43 | 59 | + | 16.35 | TTTATTTTTCTCTTTTT |
| HERV4_I | ASR1 | 4288 | 4296 | + | 16.33 | AGGCCCAAT |
| HERV4_I | ASR1 | 5054 | 5062 | - | 16.33 | AGGCCCAAT |
| HERV4_I | eor-1 | 64 | 76 | - | 16.31 | AGAGAGAGAGAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
