HERV15
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000161 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Catarrhini |
| Length | 8751 |
| Kimura value | 9.18 |
| Tau index | 0.8405 |
| Description | ERV1 endogenous retrovirus, HERV15 subfamily |
| Comment | The associated Long Terminal Repeat is LTR15. |
| Sequence |
TTTCTGGNGGCTCAGACCGGGATTGGAGACGACAGATTTACTGTCTCCTTTGCCTGCGGGACTAGAGCCCCGGGGCCGGGGGAGACCCGGCATCCAAGGCGCGCCACGGGGGAGCTTCACCCGGATGGAGACCGGCTCTCCCCGCATCCCGGCGCCCTGCCCGGCAGCGCAACGGAACCGGGGATGGGGCTGCAGGACGATACCAGCACTTCAGGAACCGCGGTAAGGAGNAAGGGCCCAAGGCAGGAAAGCCCGTCCCATAGGGACGAAGGGGAGCTTGATCACCTCCCGGGGACCGACCACTAATCCAACCCAGAGTGGCTGGGGGCGGCAGGAGTGGCCTGCCAATTTGGATGAACCTCGTGTCCCCACTAACAAGTGAAAGTGGTTCACTGGTGGAGAAAATGGGCCGATAGAGCGGCAAGTGCAGCAAGGNAGAGCTTGCTGGCAGGGTGGCAAGAGTGGCTTGCCACCCCAACTGGGAGTGTGTGGGTGCGTGTGAACCTACCCGGGACACGAGAGAGGCTCGTTTCGTCCGATGAGGAGTCCTGGGGTAGGAGTGGTGTGTGTATGTGTGTGAATGTGGGAGCCTAACTAGGCTCACCCGGGACACGAGAGAGGCTCGTTTCGTCCGATGAGGAGTCCTGGGGCAGGGAAGGTGTGTGAAAGAGACGGTCTCGGGAGAGGCCAATGCGGGGAGTGACGTGGGGAGGCACAGATCCCTTAGCGCGGGCTGTGTGCTCCGAGGCGAGTGCGGGGGAAATCAGACCTAGGACGCTGCATACGGCTGATAGGACCAGCTCCACGGCCGCAGCAGGCTGTGACAGGGGAAGGCACGTTCCTGGCTAAGCAGCGTCCGAAACTCCCGTAATAGGACCCGGTCTGGTGGACCCGAGAGTGAAAGTGAGAGTGAAAGTGCGCCGCAAGGGAGGAAATGGGAGGGAAAGCGTCGAAACCGACTCCTTTGGAGTGCATGATAAAGAATTTTAAAAAAGGATTTAGAGGTGATTATGGGATGAAACTGGATGCTCAAAAGTTAAGGACATACTGTGAANTAGANTGGCCCGCTTTCAATGTGGGGTGGCCCNCCGAAGGCACAATAGACAGGGAATTAATTGGCCGTGTGTTTAAGGTGGTCACTGGAGTCGGAGGACAACCAGGACACCCAGACCAGTTTCCCTATATNGACTCTTGGCTCAATGTGGCACAAACTCGCCCCAAGTGGCTACAGCCCTGCCTAGAGGGATATTGCAAGGCATTAGTGGCTCGGGCAGCCCAACCAAAGGAAGCAGAGGAACCTAAAGCCCCTAGCGTCTCCCAGGAAAAGGAATCCCCGAAGCCTCAGCCGAAACCAGTTCTTCAGGCCCCACCTGAGGAAAGGGAATGTCCGCCCCCATATATGTGCCAGTCTACCCGTCTTTGGCCAGAATAAGGCAGGAGGCAGAGTCAGGAGCATCCGGAGAGTCGGGCTCGGAGGAAAGTGAGGCTCAGTCTCCCCCGACCCCAGAGGAACAGAAGCCCCCGTTAGAAAAAAACAAGGAAGATGGACAGGGCGAGGCAGCTGGGCGCCTCCGCTCAGGCCGACCACGGGCTTTGCAGATGCCACTTCGAGAGACCAGGACACAAGTTTATGATGACCAGGGGCAGATACAAGGTGGCCCTAGGCTTTATGTTTATCAGCCTTTCTCCACTACTGATCTCTTAAATTGGAAACAGCACGCCCCCTCCTATACAGAAAAGCCTCAGGCTCTCATTGATTTGGTGAATTCTATTATTATGACACATAACCCGACCTGGCCGGATTGTCAACAACTTTTGCTAACTTTATTTAATACAGAGGAGCATAGGAGAGTTAATCAGGCAGCTCTCAGCTGGTTAGAAGGGGAAGCCCCAGAGGCCACCCCTAACCCACGCCAGTTCGCCGTGGAGCGATACCCAAATGAGGACCCTAACTGGGACCCAAATGAGGCAGGGGACATGGAACGGCTGCAGCTATATAGAAAGGCACTCCTGAACGGGATAAAAGCAGGAGGAAGGAAGGCAATGAATATGAGTAAAATATCAGAAGTGCGCCAAAAGCCTGACGAAAGCCCAAGTGCATTCTATGAAAGGCTTTGTGAGGCATATAGGCTGTACACTCCAATTATTCCAGAGGCTCCTGAAAACCAAAATATGATAAATATGACCTTTGTCAGGCAAGCTCAGGGAGACATAAGACGAAAGCTTCAGAAGCTGGAAGGCTTTGCAGGGAAAAATATTAGTGAACTCCTGGAAATAGCAAACAAAGTATACATAAACCGGGAAGAAGAGGCAGAGAGAAAGGAAGAAAGAAAAACCAGAAATAGAAACAAAGAGACGGCTCAATTTATAGCTGCTGCACTAGCAGAAAGTAACCCTGGATTTGCTAGAGGGCGTGGCCGAGGCAGAGGCCGAGGAAGAGGGCAGACAAGACCGGGAGANGAAAGCCGGTCCCGGTTGGACAGGAACCAATGTGCAAGGTGCAGGCAAATGGGCCACTGGAAAGATGAGTGCCCCGAAAAGGAAAAGGATGGAGATGATGGTCAATGGTCTAACACCCGAGTGCGGCGTTCGGTTGCTAGTCGTGGTGCTTCAAAGGCAGATCCTGATCTGATCGGCTTAGCGGGGGCCGAGAATTTTGAGGACTGAGACAGACCGGGCTCCATCTTTTTAGGCCCCGGGGAGCCTATGGTCTCTATGGAAGTAGGGGGCCGATTAATGGATTTTTTGGTCGATACTGGTGCTGATTTCTCTGTGGTAACTCACCCAATTAGCCCCCCCACAAAGAACTGTGCTACTATCGTAGGGGCTACTGGGGCCAAAGAAAAGAGACCTTTTTGCAAATCCAGGAGATGTGTTATTGGGGGACAAGAAGTGCAGCATGAGTTTCTATATATGCCAAATTGTCCAGTGCCCTTGTTGGGGAGAGACTTACTCCAGAAACTGCAGGCACAAATTTCCTTTACACCTAAAGGGAATATGACNCTGGAGTTTGGAAAGTCNAAGGCAATGGTATTGACTCTAACTGTCCCAAGGGCTGAGGAATGGCGGCTCTATGAACTGTGTGCCAGAAGGCCGCCGGAGCCGGACCTACACAATATGTGGGGAATGCTTTTCAAGGTACCAGGTGTATGGGCTGAGGACAACCCCCCTGGACTTGCTGCAAACAGACCCCCGGTGGTAGTAGAGCTTAACCCTCATGCTGCCCCGGTACGAGTCCGTCAATACCCACTACCCAGAGAGGCAATTGATGGCATAACAAAACATCTAAATCGGCTCTATGAACATGGGATTATAGTAAAATGCAAGTCCTCNTGGAATACTCCTCTGCTGCCCGTGCGCAAGCCAAATGGTGAATACAGGCCAGTGCAGGACCTCCGGGCGGTAAACAAGGCCACTGTCACTATCCATGCCATAGTACCCAACCCATACACAATGTTGGGACAGATTCCTGCTGANGCCACNTGGTTCACGTGTCTGGACTTAAAGGATGCCTTCTTTTGCTTGAGGCTTGCTCCCCAAAGTCAGCCTATATTTGCCTTCCAGTGGGGGCAATCGCAATATACCTGGACAAGGCTGCCGCAAGGGTTTAAGAATTCTCCCACTATCTTCGAGGAGGCTTTGGCTACCGACCTTGAGGCTTTTGCGCCACCTAGTGACAATTGTGTGCTATTACAATACATTGATGATTTGCTATTCGCTGCCCCCANGAGGGAGGAATGCCTCCAAGGAACAGAGAGGCTTCTTCACCTGCTGTGTGAAGCTGGTTACAAAGTGTCCAAGGACAAGGCAAAAGTCTGTTTTCGGGAGGTTGGATATCTAGGATTCATGGTATCCCAAGGCCAGCGCAGGCTTGGAAGTGCACGCAAGGAGGCTGTATGTGCATTGCCCACCCCAGTTACAAGGCGGCAGGTCAGGGAATTTCTAGGCGCGGCGGGATTCTGCCGAATCTGGATTCCAAACTTCTCCCTTATAGCAAGGCCCTTATATGAGGCTACCAAAGGAAAGGAAAGAGAGCCCCTCCTATGGGAAAAGGAACAGGAAAAGGCCTTCAAGGATATAAAGGAAGCTCTCATCCAGGCCCCGGCGCTAGGGTTGCCAGATGTAAAAAAGCCCTTCTTTTTGTATGTGGATGAACGAAAGGGAATGGCAGTCGGAGTCTTAACTCAGTTGTTGGGCTCTTGGCATCGGCCGGTAGCATACTTATCCAAAAGACTGGACTTGGTGGCCTTAGGTTGGCCCCACTGCCTCAGGGCGTTGGCAGCTACCGCAATCCTTATAGAAGATGCCAACAAGCTAGCCCTAGGTCAGAAGTTAATAGTTCGGGTGCCACACGCTGTAGTCACCTTAATGGAGCAAAGAGGACATCGTTGGCTGTCCAACTCTAGAATGCTAAAGTATCAAGGGCTTCTGTGTGAAAATCCCCAGATAACACTAGAGACTGTAAATACCTTGAACCCAGCTACCCTGCTGCCTGTGGAGGAACCCGATTGGAAGGACGGTGGGTTGCCTCACTGCTGGCAGGACCTTCCCCACTGTTGCATAAATACGGTGGACGAAGTGTTCTCGAGCCGGGAAGATCTCAGAGATACCCCCTTGGAGAGCCCAGATGTTGAATACTTCACTGATGGTAGCAGTTTCATAACAGATGGGGTGCGATATGCAGGGTATGCAGTAGTGACCCAACACTCGGTGGTCGAGGCTCAAGCCTTACCTTCTGGGACTTCCGCTCAGAAGGCTGAATTAATAGCATTAACCAGAGCACTGTTATTGGCCAAGGGGAAGAAAGTAAACATATATACTGACTCAAGATATGCTTTTGCAACCCTGCACGCCCATGGGGCAATATACAAAGAGAGAGGACTTTTGACTACTGAAGGAAAAGAAATAAAAAATAAAGAGGAAATTTTGCAATTATTAGAAGCCGTATGGGCTCCAGAGAAGGTGGCTGTCATTCATTGCAAAGGACACCAAATCGGGAAAAGCTATGAGGCGCAGGGCAACAGAAAGGCAGACCGAGAGGCTCGGCGGGCAGCAATGAGCAAGGCTTTACCTGAAGAAAGAACTCTAGCAATGCCTCTCCTTATAGAGCCCCCTTTGCCGGAGGTACCCAATTACTCTTCAAGTGAAAAAGCTTGGTTTGGTCAGGAAACAGGAAAATATATTAAAGGTGGATGGTGGCTGTTCTCTGACGGGAGGCTAGCCGTCCCAGAGACAATAGCCCCAAGGTTTGTGAAGCAGATCCATCAAGGAACACACATTGGAAGGACGGCCCTAGAGACTTTGATAGGTCGGCACTTCTATGTGCCACGGCTCTCTGCCATCACCCGTGCTGTTTGTGAACAATGTCTATCCTGTGCCCGGAATAATCCAAAACAAGGACCTACTCGACCCCCAGGAATTCAGGAAACGGGAGCTGTGCCTTGTGAGAACCTGCTTGTAGACTTTACCGAGTTGCCTCGAGCAGGAGGTTACCGGTATATGCTAGTGTTTGTTTGCACCTTCTCGGGGTGGGTTGAGGCCTTCCCCACCAGGACTGAAAAGGCACGAGAGGTGACAAAGGTGCTACTAAAAGACATCATACCAAGATTTGGGTTGCCTTTAACCCTAGGATCAGACAATGGTCCTGCATTTGTGGCAGAAGTAGTACAACAGCTGACTCAACTTTTAAAGATCAAATGGAAACTGCACACAGCCTACTGACCACAGAGTTCAGGGAAGGTGGAACGGATGAACCGGACACTCAAACAGCTACTAAAAAAGTTTTGCCAGGAAACTCACTTACGATGGGATCAGGTCTTGCCCATGGTCCTCCTCCAGGTCAGGTGTACACCTACAAAACAAACTGGGTATTCGCCCTATGAAATATTGTTCGGAAGGCCACCCCCAATCATTAATCAAATTAGAGGGGATTTAAAGGAGTTAGGAGAGCTAACCCTTAGAAGACAGATGCAGGCTTTAGGAGTGGCAATGCAGGAGGTGCANGGCTGGGTAAGAGAAAGGATACCTATAAGTCTAACAGACCCAGTGCATCCACATAAGCCGGGGGACTCTGTCTGGGTTAAAAGGTGGAATCCAACNACCCTGGGACCCNTACGGGATGGGCCCCATATTGTAATCATGTCTACTCCCACTGCTGTTAAAGTTGCAGGTGTCACACCTTGGATTCACCATAGCCGGCTGAAACCAGCGGCAGCAGTGACTCCCGACGACGACCAGTGGATTAGCCAACAAGACCCAGATCGCCCCACCCGAATAGTCCTACGGCGAAACCCAACCACCGGTAAGAAGGACAACTGCCCTGCTCTGACCACACCGGAGGCTGGTCAGTCTACGCACGGCTGAAGCTTGAGGATCCTGCAAGCTCTGCTCTAGTCACATCCCGGAAGCTGACTAGTCTACGCACAGCCGAAGCTAAGAGGACCATCTCCGGATAAGTAAATGTGGATACAATTTATAAGCCTAGTTATAATTCTGTCAATACTGATTGTTCTGTTGTTACGTTATTACTGCAAATGCTGCAAATGTCTATGCCCAGAGGAAGGTTTGCCATGCCCATGTGTAGTGTAAGCATGTTTCTATTACATACACTGATGTTGTTACCATTTCTGCCTATACTAAAAGGGGAGAAATCTCTAGAAGGATGCCCACACTGTGTACACACTACCTGGGTAAGGAATACCATAGTTAAAACTCTACTGTACCATACCTACTATGAATGTACAGGAACCAAGTTAGGAACCTGCACATACAACCAGACCACCTATTCAGTCTGTGACCCAGGAAATAATCAGCTATATGTATGTTATGACCCTAAGCTCTTACCCTATGAATTCTGGTTTGAGGTACATATTAAATCAGAGAGAGAAAAAGAAGGAGAGCTTATAGCTCGAACCAAAGAAGCCCCTCCCTCCTATAAAGGGCCTATTTCCTTGTACTTTGATGCCTGCCATGCCGCATATGTTCATAATCCTAAAAAACCAGAAGCAGTCTGCAATGGTTTAACACAAGAGAGGCTTAGCAGCAGCAGCCCTAAACATCTGTACGGAGAACCACAAATCGGATGCCCAGACTGTAACATTCAGTGGTCTACGCTAACACAGCTCCAACACTTATATTCAGGAAGGACTGCTCTGCTAAGTAGTATGTCAACCAAACCAAATTGTAAGACAAGGACATGCAATCCTTTAAATTTTACTATCTTAAAGCCAGAGCTACCTTTTTGGTCTACAGGACAGACAGCACTATTACGAGTTGATAGACAAGGAGCAGGCCTTGGAGTTCCACTACTAATTGTCAAAAAGACTAGAAGGACTCAAATGCGTCCAACCCCGCAATTCCGGGTCCATAAGTCATTCTATAAGCATTTTGATCAGCCAGTGCCCGAGCTTCCCCCATCAACCAAAAACTTATTTGCTCAACTAGCTGAAAACATAGCTGGCAGCTTAGGAATTTCCTCATGCTATGTATGTGGAGGAACTAATATGGGGGACCAGTGGCCATGGGAGGCAAAGGAATTAATGCCACAAGATAACTTCACTTCGCCTAACCCTGCCAGTGAACCAACAGCCTCAGCCAGTGTTTGGTTGTTAAAAACCTCCATAATTGGAAAGTACTGTATCGCCCGATGGGGAAAGGCTTTCACAGAGGCAGTAGGAGAAACAACCTGCCTAGGGCAACAGTATTATGATGAGACTAAAAACAAAACTCTATGGAGAAACGCCCAGAACGACTCCTACTTACCAGATCCAAACCCTTTCTCTCGATTCTCTACTCTAAGCCACTCTTGGCATCAGCTAGAGGCTCCAAATGCTTGGAAGGCACCCTCTGGCCTATATTGGATCTGTGGAGCACGGGCATATCGGCAACTGCCGGCTAAATGGACAGGGGCATGTGTGTTAGGAACAATCAAGCCATCCTTCTTTCTAATTCCTCTAAAGCAAGGGGAACTCTTAGGATATCCAGTTTATGATGAAAATAAAAGAACTAGAAGAAGCATAATCACAAAAATAGACACAAATATCAAAAAGGATGTGGACATAGGAGACTGGAAAGATAATGAATGGCCTCCTGAAAGAATCATTAAATACTATGGGCCAGCTACCTGGGCGCAAGACGGGTCATGGGGGTACCGCACCCCAATCTATATGCTCAACCGCATCATAAGGTTGCAGGCAGTCCTTGAAATTATAACCAATGAAACGTCAAGGGCACTAGATTTATTGGCAATACAAGCAACACAAATGAGAAATGCTATATATCAAAATAGATTGGCTTTAGATTACCTCTTAGCCTCAGAAGGAGGAGTATGTGGAAAATTTAATTTAACCAACTGTTGCCTAGAAATCGATGATAATGGCCGAGCTGTCATGGAAATCACAGCTAGAATGCGCAAGTTGGCCCATGTTCCAGTTCAGACTTGGTCCGGGTGGTCCCCGGATTCCTTGTTTGGAGGATGGTTCTCAACCTTTGGAGGATTCAAAACCCTCATTGGTGGGTTCTTGCTTATTCTTGGCATCTGCCTCATCCTCCCTTGCCTTTTACCCCTGTTTATTAGGAGTATTCAGTCAACTATAGAGGCAATAGTAACCCGACACACTACCGCGCAGTTGATGGCATTAACCAAATATCAGCCGCTGCCAGTAGAAGAAGNAGCTCAGCTCCGCGAAGAGGTGGCAAATAGTGGTGCTTTCTATTAACACCTTTGTTATAAAAAGCACCAAAGGGGGGAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| HERV15 | ZNF449 | 1272 | 1281 | + | 16.93 | CAGCCCAACC |
| HERV15 | ZNF708 | 5434 | 5442 | + | 16.87 | GCTGTGCCT |
| HERV15 | CTCF | 3664 | 3673 | - | 16.84 | TAGGTGGCGC |
| HERV15 | Zic2 | 3768 | 3776 | - | 16.82 | CACAGCAGG |
| HERV15 | Rel | 1882 | 1892 | - | 16.77 | GGGGCTTCCCC |
| HERV15 | AT2G38090 | 4218 | 4230 | - | 16.70 | TTTGGATAAGTAT |
| HERV15 | BPC6 | 6877 | 6897 | - | 16.66 | CTCCTTCTTTTTCTCTCTCTG |
| HERV15 | FLC | 7618 | 7631 | + | 16.60 | CCATAATTGGAAAG |
| HERV15 | Klf3/8/12 | 2410 | 2418 | - | 16.60 | GCCACGCCC |
| HERV15 | PROP1 | 5913 | 5923 | + | 16.58 | TAATCAAATTA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
