HERV15
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000161 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Catarrhini |
| Length | 8751 |
| Kimura value | 9.18 |
| Tau index | 0.8405 |
| Description | ERV1 endogenous retrovirus, HERV15 subfamily |
| Comment | The associated Long Terminal Repeat is LTR15. |
| Sequence |
TTTCTGGNGGCTCAGACCGGGATTGGAGACGACAGATTTACTGTCTCCTTTGCCTGCGGGACTAGAGCCCCGGGGCCGGGGGAGACCCGGCATCCAAGGCGCGCCACGGGGGAGCTTCACCCGGATGGAGACCGGCTCTCCCCGCATCCCGGCGCCCTGCCCGGCAGCGCAACGGAACCGGGGATGGGGCTGCAGGACGATACCAGCACTTCAGGAACCGCGGTAAGGAGNAAGGGCCCAAGGCAGGAAAGCCCGTCCCATAGGGACGAAGGGGAGCTTGATCACCTCCCGGGGACCGACCACTAATCCAACCCAGAGTGGCTGGGGGCGGCAGGAGTGGCCTGCCAATTTGGATGAACCTCGTGTCCCCACTAACAAGTGAAAGTGGTTCACTGGTGGAGAAAATGGGCCGATAGAGCGGCAAGTGCAGCAAGGNAGAGCTTGCTGGCAGGGTGGCAAGAGTGGCTTGCCACCCCAACTGGGAGTGTGTGGGTGCGTGTGAACCTACCCGGGACACGAGAGAGGCTCGTTTCGTCCGATGAGGAGTCCTGGGGTAGGAGTGGTGTGTGTATGTGTGTGAATGTGGGAGCCTAACTAGGCTCACCCGGGACACGAGAGAGGCTCGTTTCGTCCGATGAGGAGTCCTGGGGCAGGGAAGGTGTGTGAAAGAGACGGTCTCGGGAGAGGCCAATGCGGGGAGTGACGTGGGGAGGCACAGATCCCTTAGCGCGGGCTGTGTGCTCCGAGGCGAGTGCGGGGGAAATCAGACCTAGGACGCTGCATACGGCTGATAGGACCAGCTCCACGGCCGCAGCAGGCTGTGACAGGGGAAGGCACGTTCCTGGCTAAGCAGCGTCCGAAACTCCCGTAATAGGACCCGGTCTGGTGGACCCGAGAGTGAAAGTGAGAGTGAAAGTGCGCCGCAAGGGAGGAAATGGGAGGGAAAGCGTCGAAACCGACTCCTTTGGAGTGCATGATAAAGAATTTTAAAAAAGGATTTAGAGGTGATTATGGGATGAAACTGGATGCTCAAAAGTTAAGGACATACTGTGAANTAGANTGGCCCGCTTTCAATGTGGGGTGGCCCNCCGAAGGCACAATAGACAGGGAATTAATTGGCCGTGTGTTTAAGGTGGTCACTGGAGTCGGAGGACAACCAGGACACCCAGACCAGTTTCCCTATATNGACTCTTGGCTCAATGTGGCACAAACTCGCCCCAAGTGGCTACAGCCCTGCCTAGAGGGATATTGCAAGGCATTAGTGGCTCGGGCAGCCCAACCAAAGGAAGCAGAGGAACCTAAAGCCCCTAGCGTCTCCCAGGAAAAGGAATCCCCGAAGCCTCAGCCGAAACCAGTTCTTCAGGCCCCACCTGAGGAAAGGGAATGTCCGCCCCCATATATGTGCCAGTCTACCCGTCTTTGGCCAGAATAAGGCAGGAGGCAGAGTCAGGAGCATCCGGAGAGTCGGGCTCGGAGGAAAGTGAGGCTCAGTCTCCCCCGACCCCAGAGGAACAGAAGCCCCCGTTAGAAAAAAACAAGGAAGATGGACAGGGCGAGGCAGCTGGGCGCCTCCGCTCAGGCCGACCACGGGCTTTGCAGATGCCACTTCGAGAGACCAGGACACAAGTTTATGATGACCAGGGGCAGATACAAGGTGGCCCTAGGCTTTATGTTTATCAGCCTTTCTCCACTACTGATCTCTTAAATTGGAAACAGCACGCCCCCTCCTATACAGAAAAGCCTCAGGCTCTCATTGATTTGGTGAATTCTATTATTATGACACATAACCCGACCTGGCCGGATTGTCAACAACTTTTGCTAACTTTATTTAATACAGAGGAGCATAGGAGAGTTAATCAGGCAGCTCTCAGCTGGTTAGAAGGGGAAGCCCCAGAGGCCACCCCTAACCCACGCCAGTTCGCCGTGGAGCGATACCCAAATGAGGACCCTAACTGGGACCCAAATGAGGCAGGGGACATGGAACGGCTGCAGCTATATAGAAAGGCACTCCTGAACGGGATAAAAGCAGGAGGAAGGAAGGCAATGAATATGAGTAAAATATCAGAAGTGCGCCAAAAGCCTGACGAAAGCCCAAGTGCATTCTATGAAAGGCTTTGTGAGGCATATAGGCTGTACACTCCAATTATTCCAGAGGCTCCTGAAAACCAAAATATGATAAATATGACCTTTGTCAGGCAAGCTCAGGGAGACATAAGACGAAAGCTTCAGAAGCTGGAAGGCTTTGCAGGGAAAAATATTAGTGAACTCCTGGAAATAGCAAACAAAGTATACATAAACCGGGAAGAAGAGGCAGAGAGAAAGGAAGAAAGAAAAACCAGAAATAGAAACAAAGAGACGGCTCAATTTATAGCTGCTGCACTAGCAGAAAGTAACCCTGGATTTGCTAGAGGGCGTGGCCGAGGCAGAGGCCGAGGAAGAGGGCAGACAAGACCGGGAGANGAAAGCCGGTCCCGGTTGGACAGGAACCAATGTGCAAGGTGCAGGCAAATGGGCCACTGGAAAGATGAGTGCCCCGAAAAGGAAAAGGATGGAGATGATGGTCAATGGTCTAACACCCGAGTGCGGCGTTCGGTTGCTAGTCGTGGTGCTTCAAAGGCAGATCCTGATCTGATCGGCTTAGCGGGGGCCGAGAATTTTGAGGACTGAGACAGACCGGGCTCCATCTTTTTAGGCCCCGGGGAGCCTATGGTCTCTATGGAAGTAGGGGGCCGATTAATGGATTTTTTGGTCGATACTGGTGCTGATTTCTCTGTGGTAACTCACCCAATTAGCCCCCCCACAAAGAACTGTGCTACTATCGTAGGGGCTACTGGGGCCAAAGAAAAGAGACCTTTTTGCAAATCCAGGAGATGTGTTATTGGGGGACAAGAAGTGCAGCATGAGTTTCTATATATGCCAAATTGTCCAGTGCCCTTGTTGGGGAGAGACTTACTCCAGAAACTGCAGGCACAAATTTCCTTTACACCTAAAGGGAATATGACNCTGGAGTTTGGAAAGTCNAAGGCAATGGTATTGACTCTAACTGTCCCAAGGGCTGAGGAATGGCGGCTCTATGAACTGTGTGCCAGAAGGCCGCCGGAGCCGGACCTACACAATATGTGGGGAATGCTTTTCAAGGTACCAGGTGTATGGGCTGAGGACAACCCCCCTGGACTTGCTGCAAACAGACCCCCGGTGGTAGTAGAGCTTAACCCTCATGCTGCCCCGGTACGAGTCCGTCAATACCCACTACCCAGAGAGGCAATTGATGGCATAACAAAACATCTAAATCGGCTCTATGAACATGGGATTATAGTAAAATGCAAGTCCTCNTGGAATACTCCTCTGCTGCCCGTGCGCAAGCCAAATGGTGAATACAGGCCAGTGCAGGACCTCCGGGCGGTAAACAAGGCCACTGTCACTATCCATGCCATAGTACCCAACCCATACACAATGTTGGGACAGATTCCTGCTGANGCCACNTGGTTCACGTGTCTGGACTTAAAGGATGCCTTCTTTTGCTTGAGGCTTGCTCCCCAAAGTCAGCCTATATTTGCCTTCCAGTGGGGGCAATCGCAATATACCTGGACAAGGCTGCCGCAAGGGTTTAAGAATTCTCCCACTATCTTCGAGGAGGCTTTGGCTACCGACCTTGAGGCTTTTGCGCCACCTAGTGACAATTGTGTGCTATTACAATACATTGATGATTTGCTATTCGCTGCCCCCANGAGGGAGGAATGCCTCCAAGGAACAGAGAGGCTTCTTCACCTGCTGTGTGAAGCTGGTTACAAAGTGTCCAAGGACAAGGCAAAAGTCTGTTTTCGGGAGGTTGGATATCTAGGATTCATGGTATCCCAAGGCCAGCGCAGGCTTGGAAGTGCACGCAAGGAGGCTGTATGTGCATTGCCCACCCCAGTTACAAGGCGGCAGGTCAGGGAATTTCTAGGCGCGGCGGGATTCTGCCGAATCTGGATTCCAAACTTCTCCCTTATAGCAAGGCCCTTATATGAGGCTACCAAAGGAAAGGAAAGAGAGCCCCTCCTATGGGAAAAGGAACAGGAAAAGGCCTTCAAGGATATAAAGGAAGCTCTCATCCAGGCCCCGGCGCTAGGGTTGCCAGATGTAAAAAAGCCCTTCTTTTTGTATGTGGATGAACGAAAGGGAATGGCAGTCGGAGTCTTAACTCAGTTGTTGGGCTCTTGGCATCGGCCGGTAGCATACTTATCCAAAAGACTGGACTTGGTGGCCTTAGGTTGGCCCCACTGCCTCAGGGCGTTGGCAGCTACCGCAATCCTTATAGAAGATGCCAACAAGCTAGCCCTAGGTCAGAAGTTAATAGTTCGGGTGCCACACGCTGTAGTCACCTTAATGGAGCAAAGAGGACATCGTTGGCTGTCCAACTCTAGAATGCTAAAGTATCAAGGGCTTCTGTGTGAAAATCCCCAGATAACACTAGAGACTGTAAATACCTTGAACCCAGCTACCCTGCTGCCTGTGGAGGAACCCGATTGGAAGGACGGTGGGTTGCCTCACTGCTGGCAGGACCTTCCCCACTGTTGCATAAATACGGTGGACGAAGTGTTCTCGAGCCGGGAAGATCTCAGAGATACCCCCTTGGAGAGCCCAGATGTTGAATACTTCACTGATGGTAGCAGTTTCATAACAGATGGGGTGCGATATGCAGGGTATGCAGTAGTGACCCAACACTCGGTGGTCGAGGCTCAAGCCTTACCTTCTGGGACTTCCGCTCAGAAGGCTGAATTAATAGCATTAACCAGAGCACTGTTATTGGCCAAGGGGAAGAAAGTAAACATATATACTGACTCAAGATATGCTTTTGCAACCCTGCACGCCCATGGGGCAATATACAAAGAGAGAGGACTTTTGACTACTGAAGGAAAAGAAATAAAAAATAAAGAGGAAATTTTGCAATTATTAGAAGCCGTATGGGCTCCAGAGAAGGTGGCTGTCATTCATTGCAAAGGACACCAAATCGGGAAAAGCTATGAGGCGCAGGGCAACAGAAAGGCAGACCGAGAGGCTCGGCGGGCAGCAATGAGCAAGGCTTTACCTGAAGAAAGAACTCTAGCAATGCCTCTCCTTATAGAGCCCCCTTTGCCGGAGGTACCCAATTACTCTTCAAGTGAAAAAGCTTGGTTTGGTCAGGAAACAGGAAAATATATTAAAGGTGGATGGTGGCTGTTCTCTGACGGGAGGCTAGCCGTCCCAGAGACAATAGCCCCAAGGTTTGTGAAGCAGATCCATCAAGGAACACACATTGGAAGGACGGCCCTAGAGACTTTGATAGGTCGGCACTTCTATGTGCCACGGCTCTCTGCCATCACCCGTGCTGTTTGTGAACAATGTCTATCCTGTGCCCGGAATAATCCAAAACAAGGACCTACTCGACCCCCAGGAATTCAGGAAACGGGAGCTGTGCCTTGTGAGAACCTGCTTGTAGACTTTACCGAGTTGCCTCGAGCAGGAGGTTACCGGTATATGCTAGTGTTTGTTTGCACCTTCTCGGGGTGGGTTGAGGCCTTCCCCACCAGGACTGAAAAGGCACGAGAGGTGACAAAGGTGCTACTAAAAGACATCATACCAAGATTTGGGTTGCCTTTAACCCTAGGATCAGACAATGGTCCTGCATTTGTGGCAGAAGTAGTACAACAGCTGACTCAACTTTTAAAGATCAAATGGAAACTGCACACAGCCTACTGACCACAGAGTTCAGGGAAGGTGGAACGGATGAACCGGACACTCAAACAGCTACTAAAAAAGTTTTGCCAGGAAACTCACTTACGATGGGATCAGGTCTTGCCCATGGTCCTCCTCCAGGTCAGGTGTACACCTACAAAACAAACTGGGTATTCGCCCTATGAAATATTGTTCGGAAGGCCACCCCCAATCATTAATCAAATTAGAGGGGATTTAAAGGAGTTAGGAGAGCTAACCCTTAGAAGACAGATGCAGGCTTTAGGAGTGGCAATGCAGGAGGTGCANGGCTGGGTAAGAGAAAGGATACCTATAAGTCTAACAGACCCAGTGCATCCACATAAGCCGGGGGACTCTGTCTGGGTTAAAAGGTGGAATCCAACNACCCTGGGACCCNTACGGGATGGGCCCCATATTGTAATCATGTCTACTCCCACTGCTGTTAAAGTTGCAGGTGTCACACCTTGGATTCACCATAGCCGGCTGAAACCAGCGGCAGCAGTGACTCCCGACGACGACCAGTGGATTAGCCAACAAGACCCAGATCGCCCCACCCGAATAGTCCTACGGCGAAACCCAACCACCGGTAAGAAGGACAACTGCCCTGCTCTGACCACACCGGAGGCTGGTCAGTCTACGCACGGCTGAAGCTTGAGGATCCTGCAAGCTCTGCTCTAGTCACATCCCGGAAGCTGACTAGTCTACGCACAGCCGAAGCTAAGAGGACCATCTCCGGATAAGTAAATGTGGATACAATTTATAAGCCTAGTTATAATTCTGTCAATACTGATTGTTCTGTTGTTACGTTATTACTGCAAATGCTGCAAATGTCTATGCCCAGAGGAAGGTTTGCCATGCCCATGTGTAGTGTAAGCATGTTTCTATTACATACACTGATGTTGTTACCATTTCTGCCTATACTAAAAGGGGAGAAATCTCTAGAAGGATGCCCACACTGTGTACACACTACCTGGGTAAGGAATACCATAGTTAAAACTCTACTGTACCATACCTACTATGAATGTACAGGAACCAAGTTAGGAACCTGCACATACAACCAGACCACCTATTCAGTCTGTGACCCAGGAAATAATCAGCTATATGTATGTTATGACCCTAAGCTCTTACCCTATGAATTCTGGTTTGAGGTACATATTAAATCAGAGAGAGAAAAAGAAGGAGAGCTTATAGCTCGAACCAAAGAAGCCCCTCCCTCCTATAAAGGGCCTATTTCCTTGTACTTTGATGCCTGCCATGCCGCATATGTTCATAATCCTAAAAAACCAGAAGCAGTCTGCAATGGTTTAACACAAGAGAGGCTTAGCAGCAGCAGCCCTAAACATCTGTACGGAGAACCACAAATCGGATGCCCAGACTGTAACATTCAGTGGTCTACGCTAACACAGCTCCAACACTTATATTCAGGAAGGACTGCTCTGCTAAGTAGTATGTCAACCAAACCAAATTGTAAGACAAGGACATGCAATCCTTTAAATTTTACTATCTTAAAGCCAGAGCTACCTTTTTGGTCTACAGGACAGACAGCACTATTACGAGTTGATAGACAAGGAGCAGGCCTTGGAGTTCCACTACTAATTGTCAAAAAGACTAGAAGGACTCAAATGCGTCCAACCCCGCAATTCCGGGTCCATAAGTCATTCTATAAGCATTTTGATCAGCCAGTGCCCGAGCTTCCCCCATCAACCAAAAACTTATTTGCTCAACTAGCTGAAAACATAGCTGGCAGCTTAGGAATTTCCTCATGCTATGTATGTGGAGGAACTAATATGGGGGACCAGTGGCCATGGGAGGCAAAGGAATTAATGCCACAAGATAACTTCACTTCGCCTAACCCTGCCAGTGAACCAACAGCCTCAGCCAGTGTTTGGTTGTTAAAAACCTCCATAATTGGAAAGTACTGTATCGCCCGATGGGGAAAGGCTTTCACAGAGGCAGTAGGAGAAACAACCTGCCTAGGGCAACAGTATTATGATGAGACTAAAAACAAAACTCTATGGAGAAACGCCCAGAACGACTCCTACTTACCAGATCCAAACCCTTTCTCTCGATTCTCTACTCTAAGCCACTCTTGGCATCAGCTAGAGGCTCCAAATGCTTGGAAGGCACCCTCTGGCCTATATTGGATCTGTGGAGCACGGGCATATCGGCAACTGCCGGCTAAATGGACAGGGGCATGTGTGTTAGGAACAATCAAGCCATCCTTCTTTCTAATTCCTCTAAAGCAAGGGGAACTCTTAGGATATCCAGTTTATGATGAAAATAAAAGAACTAGAAGAAGCATAATCACAAAAATAGACACAAATATCAAAAAGGATGTGGACATAGGAGACTGGAAAGATAATGAATGGCCTCCTGAAAGAATCATTAAATACTATGGGCCAGCTACCTGGGCGCAAGACGGGTCATGGGGGTACCGCACCCCAATCTATATGCTCAACCGCATCATAAGGTTGCAGGCAGTCCTTGAAATTATAACCAATGAAACGTCAAGGGCACTAGATTTATTGGCAATACAAGCAACACAAATGAGAAATGCTATATATCAAAATAGATTGGCTTTAGATTACCTCTTAGCCTCAGAAGGAGGAGTATGTGGAAAATTTAATTTAACCAACTGTTGCCTAGAAATCGATGATAATGGCCGAGCTGTCATGGAAATCACAGCTAGAATGCGCAAGTTGGCCCATGTTCCAGTTCAGACTTGGTCCGGGTGGTCCCCGGATTCCTTGTTTGGAGGATGGTTCTCAACCTTTGGAGGATTCAAAACCCTCATTGGTGGGTTCTTGCTTATTCTTGGCATCTGCCTCATCCTCCCTTGCCTTTTACCCCTGTTTATTAGGAGTATTCAGTCAACTATAGAGGCAATAGTAACCCGACACACTACCGCGCAGTTGATGGCATTAACCAAATATCAGCCGCTGCCAGTAGAAGAAGNAGCTCAGCTCCGCGAAGAGGTGGCAAATAGTGGTGCTTTCTATTAACACCTTTGTTATAAAAAGCACCAAAGGGGGGAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| HERV15 | BPC5 | 897 | 926 | + | -48.02 | AGTGAAAGTGAGAGTGAAAGTGCGCCGCAA |
| HERV15 | BPC5 | 2295 | 2324 | + | -49.07 | AAACCGGGAAGAAGAGGCAGAGAGAAAGGA |
| HERV15 | BPC5 | 6864 | 6893 | + | -49.23 | GTACATATTAAATCAGAGAGAGAAAAAGAA |
| HERV15 | DAL81 | 2573 | 2591 | - | -52.00 | GAACGCCGCACTCGGGTGT |
| HERV15 | DAL81 | 4092 | 4110 | - | -52.00 | TAGCGCCGGGGCCTGGATG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
