HERV15
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000161 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Catarrhini |
| Length | 8751 |
| Kimura value | 9.18 |
| Tau index | 0.8405 |
| Description | ERV1 endogenous retrovirus, HERV15 subfamily |
| Comment | The associated Long Terminal Repeat is LTR15. |
| Sequence |
TTTCTGGNGGCTCAGACCGGGATTGGAGACGACAGATTTACTGTCTCCTTTGCCTGCGGGACTAGAGCCCCGGGGCCGGGGGAGACCCGGCATCCAAGGCGCGCCACGGGGGAGCTTCACCCGGATGGAGACCGGCTCTCCCCGCATCCCGGCGCCCTGCCCGGCAGCGCAACGGAACCGGGGATGGGGCTGCAGGACGATACCAGCACTTCAGGAACCGCGGTAAGGAGNAAGGGCCCAAGGCAGGAAAGCCCGTCCCATAGGGACGAAGGGGAGCTTGATCACCTCCCGGGGACCGACCACTAATCCAACCCAGAGTGGCTGGGGGCGGCAGGAGTGGCCTGCCAATTTGGATGAACCTCGTGTCCCCACTAACAAGTGAAAGTGGTTCACTGGTGGAGAAAATGGGCCGATAGAGCGGCAAGTGCAGCAAGGNAGAGCTTGCTGGCAGGGTGGCAAGAGTGGCTTGCCACCCCAACTGGGAGTGTGTGGGTGCGTGTGAACCTACCCGGGACACGAGAGAGGCTCGTTTCGTCCGATGAGGAGTCCTGGGGTAGGAGTGGTGTGTGTATGTGTGTGAATGTGGGAGCCTAACTAGGCTCACCCGGGACACGAGAGAGGCTCGTTTCGTCCGATGAGGAGTCCTGGGGCAGGGAAGGTGTGTGAAAGAGACGGTCTCGGGAGAGGCCAATGCGGGGAGTGACGTGGGGAGGCACAGATCCCTTAGCGCGGGCTGTGTGCTCCGAGGCGAGTGCGGGGGAAATCAGACCTAGGACGCTGCATACGGCTGATAGGACCAGCTCCACGGCCGCAGCAGGCTGTGACAGGGGAAGGCACGTTCCTGGCTAAGCAGCGTCCGAAACTCCCGTAATAGGACCCGGTCTGGTGGACCCGAGAGTGAAAGTGAGAGTGAAAGTGCGCCGCAAGGGAGGAAATGGGAGGGAAAGCGTCGAAACCGACTCCTTTGGAGTGCATGATAAAGAATTTTAAAAAAGGATTTAGAGGTGATTATGGGATGAAACTGGATGCTCAAAAGTTAAGGACATACTGTGAANTAGANTGGCCCGCTTTCAATGTGGGGTGGCCCNCCGAAGGCACAATAGACAGGGAATTAATTGGCCGTGTGTTTAAGGTGGTCACTGGAGTCGGAGGACAACCAGGACACCCAGACCAGTTTCCCTATATNGACTCTTGGCTCAATGTGGCACAAACTCGCCCCAAGTGGCTACAGCCCTGCCTAGAGGGATATTGCAAGGCATTAGTGGCTCGGGCAGCCCAACCAAAGGAAGCAGAGGAACCTAAAGCCCCTAGCGTCTCCCAGGAAAAGGAATCCCCGAAGCCTCAGCCGAAACCAGTTCTTCAGGCCCCACCTGAGGAAAGGGAATGTCCGCCCCCATATATGTGCCAGTCTACCCGTCTTTGGCCAGAATAAGGCAGGAGGCAGAGTCAGGAGCATCCGGAGAGTCGGGCTCGGAGGAAAGTGAGGCTCAGTCTCCCCCGACCCCAGAGGAACAGAAGCCCCCGTTAGAAAAAAACAAGGAAGATGGACAGGGCGAGGCAGCTGGGCGCCTCCGCTCAGGCCGACCACGGGCTTTGCAGATGCCACTTCGAGAGACCAGGACACAAGTTTATGATGACCAGGGGCAGATACAAGGTGGCCCTAGGCTTTATGTTTATCAGCCTTTCTCCACTACTGATCTCTTAAATTGGAAACAGCACGCCCCCTCCTATACAGAAAAGCCTCAGGCTCTCATTGATTTGGTGAATTCTATTATTATGACACATAACCCGACCTGGCCGGATTGTCAACAACTTTTGCTAACTTTATTTAATACAGAGGAGCATAGGAGAGTTAATCAGGCAGCTCTCAGCTGGTTAGAAGGGGAAGCCCCAGAGGCCACCCCTAACCCACGCCAGTTCGCCGTGGAGCGATACCCAAATGAGGACCCTAACTGGGACCCAAATGAGGCAGGGGACATGGAACGGCTGCAGCTATATAGAAAGGCACTCCTGAACGGGATAAAAGCAGGAGGAAGGAAGGCAATGAATATGAGTAAAATATCAGAAGTGCGCCAAAAGCCTGACGAAAGCCCAAGTGCATTCTATGAAAGGCTTTGTGAGGCATATAGGCTGTACACTCCAATTATTCCAGAGGCTCCTGAAAACCAAAATATGATAAATATGACCTTTGTCAGGCAAGCTCAGGGAGACATAAGACGAAAGCTTCAGAAGCTGGAAGGCTTTGCAGGGAAAAATATTAGTGAACTCCTGGAAATAGCAAACAAAGTATACATAAACCGGGAAGAAGAGGCAGAGAGAAAGGAAGAAAGAAAAACCAGAAATAGAAACAAAGAGACGGCTCAATTTATAGCTGCTGCACTAGCAGAAAGTAACCCTGGATTTGCTAGAGGGCGTGGCCGAGGCAGAGGCCGAGGAAGAGGGCAGACAAGACCGGGAGANGAAAGCCGGTCCCGGTTGGACAGGAACCAATGTGCAAGGTGCAGGCAAATGGGCCACTGGAAAGATGAGTGCCCCGAAAAGGAAAAGGATGGAGATGATGGTCAATGGTCTAACACCCGAGTGCGGCGTTCGGTTGCTAGTCGTGGTGCTTCAAAGGCAGATCCTGATCTGATCGGCTTAGCGGGGGCCGAGAATTTTGAGGACTGAGACAGACCGGGCTCCATCTTTTTAGGCCCCGGGGAGCCTATGGTCTCTATGGAAGTAGGGGGCCGATTAATGGATTTTTTGGTCGATACTGGTGCTGATTTCTCTGTGGTAACTCACCCAATTAGCCCCCCCACAAAGAACTGTGCTACTATCGTAGGGGCTACTGGGGCCAAAGAAAAGAGACCTTTTTGCAAATCCAGGAGATGTGTTATTGGGGGACAAGAAGTGCAGCATGAGTTTCTATATATGCCAAATTGTCCAGTGCCCTTGTTGGGGAGAGACTTACTCCAGAAACTGCAGGCACAAATTTCCTTTACACCTAAAGGGAATATGACNCTGGAGTTTGGAAAGTCNAAGGCAATGGTATTGACTCTAACTGTCCCAAGGGCTGAGGAATGGCGGCTCTATGAACTGTGTGCCAGAAGGCCGCCGGAGCCGGACCTACACAATATGTGGGGAATGCTTTTCAAGGTACCAGGTGTATGGGCTGAGGACAACCCCCCTGGACTTGCTGCAAACAGACCCCCGGTGGTAGTAGAGCTTAACCCTCATGCTGCCCCGGTACGAGTCCGTCAATACCCACTACCCAGAGAGGCAATTGATGGCATAACAAAACATCTAAATCGGCTCTATGAACATGGGATTATAGTAAAATGCAAGTCCTCNTGGAATACTCCTCTGCTGCCCGTGCGCAAGCCAAATGGTGAATACAGGCCAGTGCAGGACCTCCGGGCGGTAAACAAGGCCACTGTCACTATCCATGCCATAGTACCCAACCCATACACAATGTTGGGACAGATTCCTGCTGANGCCACNTGGTTCACGTGTCTGGACTTAAAGGATGCCTTCTTTTGCTTGAGGCTTGCTCCCCAAAGTCAGCCTATATTTGCCTTCCAGTGGGGGCAATCGCAATATACCTGGACAAGGCTGCCGCAAGGGTTTAAGAATTCTCCCACTATCTTCGAGGAGGCTTTGGCTACCGACCTTGAGGCTTTTGCGCCACCTAGTGACAATTGTGTGCTATTACAATACATTGATGATTTGCTATTCGCTGCCCCCANGAGGGAGGAATGCCTCCAAGGAACAGAGAGGCTTCTTCACCTGCTGTGTGAAGCTGGTTACAAAGTGTCCAAGGACAAGGCAAAAGTCTGTTTTCGGGAGGTTGGATATCTAGGATTCATGGTATCCCAAGGCCAGCGCAGGCTTGGAAGTGCACGCAAGGAGGCTGTATGTGCATTGCCCACCCCAGTTACAAGGCGGCAGGTCAGGGAATTTCTAGGCGCGGCGGGATTCTGCCGAATCTGGATTCCAAACTTCTCCCTTATAGCAAGGCCCTTATATGAGGCTACCAAAGGAAAGGAAAGAGAGCCCCTCCTATGGGAAAAGGAACAGGAAAAGGCCTTCAAGGATATAAAGGAAGCTCTCATCCAGGCCCCGGCGCTAGGGTTGCCAGATGTAAAAAAGCCCTTCTTTTTGTATGTGGATGAACGAAAGGGAATGGCAGTCGGAGTCTTAACTCAGTTGTTGGGCTCTTGGCATCGGCCGGTAGCATACTTATCCAAAAGACTGGACTTGGTGGCCTTAGGTTGGCCCCACTGCCTCAGGGCGTTGGCAGCTACCGCAATCCTTATAGAAGATGCCAACAAGCTAGCCCTAGGTCAGAAGTTAATAGTTCGGGTGCCACACGCTGTAGTCACCTTAATGGAGCAAAGAGGACATCGTTGGCTGTCCAACTCTAGAATGCTAAAGTATCAAGGGCTTCTGTGTGAAAATCCCCAGATAACACTAGAGACTGTAAATACCTTGAACCCAGCTACCCTGCTGCCTGTGGAGGAACCCGATTGGAAGGACGGTGGGTTGCCTCACTGCTGGCAGGACCTTCCCCACTGTTGCATAAATACGGTGGACGAAGTGTTCTCGAGCCGGGAAGATCTCAGAGATACCCCCTTGGAGAGCCCAGATGTTGAATACTTCACTGATGGTAGCAGTTTCATAACAGATGGGGTGCGATATGCAGGGTATGCAGTAGTGACCCAACACTCGGTGGTCGAGGCTCAAGCCTTACCTTCTGGGACTTCCGCTCAGAAGGCTGAATTAATAGCATTAACCAGAGCACTGTTATTGGCCAAGGGGAAGAAAGTAAACATATATACTGACTCAAGATATGCTTTTGCAACCCTGCACGCCCATGGGGCAATATACAAAGAGAGAGGACTTTTGACTACTGAAGGAAAAGAAATAAAAAATAAAGAGGAAATTTTGCAATTATTAGAAGCCGTATGGGCTCCAGAGAAGGTGGCTGTCATTCATTGCAAAGGACACCAAATCGGGAAAAGCTATGAGGCGCAGGGCAACAGAAAGGCAGACCGAGAGGCTCGGCGGGCAGCAATGAGCAAGGCTTTACCTGAAGAAAGAACTCTAGCAATGCCTCTCCTTATAGAGCCCCCTTTGCCGGAGGTACCCAATTACTCTTCAAGTGAAAAAGCTTGGTTTGGTCAGGAAACAGGAAAATATATTAAAGGTGGATGGTGGCTGTTCTCTGACGGGAGGCTAGCCGTCCCAGAGACAATAGCCCCAAGGTTTGTGAAGCAGATCCATCAAGGAACACACATTGGAAGGACGGCCCTAGAGACTTTGATAGGTCGGCACTTCTATGTGCCACGGCTCTCTGCCATCACCCGTGCTGTTTGTGAACAATGTCTATCCTGTGCCCGGAATAATCCAAAACAAGGACCTACTCGACCCCCAGGAATTCAGGAAACGGGAGCTGTGCCTTGTGAGAACCTGCTTGTAGACTTTACCGAGTTGCCTCGAGCAGGAGGTTACCGGTATATGCTAGTGTTTGTTTGCACCTTCTCGGGGTGGGTTGAGGCCTTCCCCACCAGGACTGAAAAGGCACGAGAGGTGACAAAGGTGCTACTAAAAGACATCATACCAAGATTTGGGTTGCCTTTAACCCTAGGATCAGACAATGGTCCTGCATTTGTGGCAGAAGTAGTACAACAGCTGACTCAACTTTTAAAGATCAAATGGAAACTGCACACAGCCTACTGACCACAGAGTTCAGGGAAGGTGGAACGGATGAACCGGACACTCAAACAGCTACTAAAAAAGTTTTGCCAGGAAACTCACTTACGATGGGATCAGGTCTTGCCCATGGTCCTCCTCCAGGTCAGGTGTACACCTACAAAACAAACTGGGTATTCGCCCTATGAAATATTGTTCGGAAGGCCACCCCCAATCATTAATCAAATTAGAGGGGATTTAAAGGAGTTAGGAGAGCTAACCCTTAGAAGACAGATGCAGGCTTTAGGAGTGGCAATGCAGGAGGTGCANGGCTGGGTAAGAGAAAGGATACCTATAAGTCTAACAGACCCAGTGCATCCACATAAGCCGGGGGACTCTGTCTGGGTTAAAAGGTGGAATCCAACNACCCTGGGACCCNTACGGGATGGGCCCCATATTGTAATCATGTCTACTCCCACTGCTGTTAAAGTTGCAGGTGTCACACCTTGGATTCACCATAGCCGGCTGAAACCAGCGGCAGCAGTGACTCCCGACGACGACCAGTGGATTAGCCAACAAGACCCAGATCGCCCCACCCGAATAGTCCTACGGCGAAACCCAACCACCGGTAAGAAGGACAACTGCCCTGCTCTGACCACACCGGAGGCTGGTCAGTCTACGCACGGCTGAAGCTTGAGGATCCTGCAAGCTCTGCTCTAGTCACATCCCGGAAGCTGACTAGTCTACGCACAGCCGAAGCTAAGAGGACCATCTCCGGATAAGTAAATGTGGATACAATTTATAAGCCTAGTTATAATTCTGTCAATACTGATTGTTCTGTTGTTACGTTATTACTGCAAATGCTGCAAATGTCTATGCCCAGAGGAAGGTTTGCCATGCCCATGTGTAGTGTAAGCATGTTTCTATTACATACACTGATGTTGTTACCATTTCTGCCTATACTAAAAGGGGAGAAATCTCTAGAAGGATGCCCACACTGTGTACACACTACCTGGGTAAGGAATACCATAGTTAAAACTCTACTGTACCATACCTACTATGAATGTACAGGAACCAAGTTAGGAACCTGCACATACAACCAGACCACCTATTCAGTCTGTGACCCAGGAAATAATCAGCTATATGTATGTTATGACCCTAAGCTCTTACCCTATGAATTCTGGTTTGAGGTACATATTAAATCAGAGAGAGAAAAAGAAGGAGAGCTTATAGCTCGAACCAAAGAAGCCCCTCCCTCCTATAAAGGGCCTATTTCCTTGTACTTTGATGCCTGCCATGCCGCATATGTTCATAATCCTAAAAAACCAGAAGCAGTCTGCAATGGTTTAACACAAGAGAGGCTTAGCAGCAGCAGCCCTAAACATCTGTACGGAGAACCACAAATCGGATGCCCAGACTGTAACATTCAGTGGTCTACGCTAACACAGCTCCAACACTTATATTCAGGAAGGACTGCTCTGCTAAGTAGTATGTCAACCAAACCAAATTGTAAGACAAGGACATGCAATCCTTTAAATTTTACTATCTTAAAGCCAGAGCTACCTTTTTGGTCTACAGGACAGACAGCACTATTACGAGTTGATAGACAAGGAGCAGGCCTTGGAGTTCCACTACTAATTGTCAAAAAGACTAGAAGGACTCAAATGCGTCCAACCCCGCAATTCCGGGTCCATAAGTCATTCTATAAGCATTTTGATCAGCCAGTGCCCGAGCTTCCCCCATCAACCAAAAACTTATTTGCTCAACTAGCTGAAAACATAGCTGGCAGCTTAGGAATTTCCTCATGCTATGTATGTGGAGGAACTAATATGGGGGACCAGTGGCCATGGGAGGCAAAGGAATTAATGCCACAAGATAACTTCACTTCGCCTAACCCTGCCAGTGAACCAACAGCCTCAGCCAGTGTTTGGTTGTTAAAAACCTCCATAATTGGAAAGTACTGTATCGCCCGATGGGGAAAGGCTTTCACAGAGGCAGTAGGAGAAACAACCTGCCTAGGGCAACAGTATTATGATGAGACTAAAAACAAAACTCTATGGAGAAACGCCCAGAACGACTCCTACTTACCAGATCCAAACCCTTTCTCTCGATTCTCTACTCTAAGCCACTCTTGGCATCAGCTAGAGGCTCCAAATGCTTGGAAGGCACCCTCTGGCCTATATTGGATCTGTGGAGCACGGGCATATCGGCAACTGCCGGCTAAATGGACAGGGGCATGTGTGTTAGGAACAATCAAGCCATCCTTCTTTCTAATTCCTCTAAAGCAAGGGGAACTCTTAGGATATCCAGTTTATGATGAAAATAAAAGAACTAGAAGAAGCATAATCACAAAAATAGACACAAATATCAAAAAGGATGTGGACATAGGAGACTGGAAAGATAATGAATGGCCTCCTGAAAGAATCATTAAATACTATGGGCCAGCTACCTGGGCGCAAGACGGGTCATGGGGGTACCGCACCCCAATCTATATGCTCAACCGCATCATAAGGTTGCAGGCAGTCCTTGAAATTATAACCAATGAAACGTCAAGGGCACTAGATTTATTGGCAATACAAGCAACACAAATGAGAAATGCTATATATCAAAATAGATTGGCTTTAGATTACCTCTTAGCCTCAGAAGGAGGAGTATGTGGAAAATTTAATTTAACCAACTGTTGCCTAGAAATCGATGATAATGGCCGAGCTGTCATGGAAATCACAGCTAGAATGCGCAAGTTGGCCCATGTTCCAGTTCAGACTTGGTCCGGGTGGTCCCCGGATTCCTTGTTTGGAGGATGGTTCTCAACCTTTGGAGGATTCAAAACCCTCATTGGTGGGTTCTTGCTTATTCTTGGCATCTGCCTCATCCTCCCTTGCCTTTTACCCCTGTTTATTAGGAGTATTCAGTCAACTATAGAGGCAATAGTAACCCGACACACTACCGCGCAGTTGATGGCATTAACCAAATATCAGCCGCTGCCAGTAGAAGAAGNAGCTCAGCTCCGCGAAGAGGTGGCAAATAGTGGTGCTTTCTATTAACACCTTTGTTATAAAAAGCACCAAAGGGGGGAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| HERV15 | GLIS3 | 2792 | 2805 | + | 17.13 | GCCCCCCCACAAAG |
| HERV15 | PHOX2B | 5913 | 5924 | + | 17.11 | TAATCAAATTAG |
| HERV15 | Fer1 | 5667 | 5679 | + | 17.10 | ACAACAGCTGACT |
| HERV15 | AGL27 | 7618 | 7631 | - | 17.09 | CTTTCCAATTATGG |
| HERV15 | SP3 | 2408 | 2418 | - | 17.08 | GCCACGCCCTC |
| HERV15 | INSM1 | 319 | 330 | + | 17.07 | TGGCTGGGGGCG |
| HERV15 | NFKB2 | 1882 | 1892 | + | 17.03 | GGGGAAGCCCC |
| HERV15 | SEP1 | 7618 | 7630 | + | 16.97 | CCATAATTGGAAA |
| HERV15 | FLC | 2336 | 2349 | + | 16.96 | CCAGAAATAGAAAC |
| HERV15 | ZNF547 | 2373 | 2385 | - | 16.94 | TGCTAGTGCAGCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
