HERV15
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000161 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Catarrhini |
| Length | 8751 |
| Kimura value | 9.18 |
| Tau index | 0.8405 |
| Description | ERV1 endogenous retrovirus, HERV15 subfamily |
| Comment | The associated Long Terminal Repeat is LTR15. |
| Sequence |
TTTCTGGNGGCTCAGACCGGGATTGGAGACGACAGATTTACTGTCTCCTTTGCCTGCGGGACTAGAGCCCCGGGGCCGGGGGAGACCCGGCATCCAAGGCGCGCCACGGGGGAGCTTCACCCGGATGGAGACCGGCTCTCCCCGCATCCCGGCGCCCTGCCCGGCAGCGCAACGGAACCGGGGATGGGGCTGCAGGACGATACCAGCACTTCAGGAACCGCGGTAAGGAGNAAGGGCCCAAGGCAGGAAAGCCCGTCCCATAGGGACGAAGGGGAGCTTGATCACCTCCCGGGGACCGACCACTAATCCAACCCAGAGTGGCTGGGGGCGGCAGGAGTGGCCTGCCAATTTGGATGAACCTCGTGTCCCCACTAACAAGTGAAAGTGGTTCACTGGTGGAGAAAATGGGCCGATAGAGCGGCAAGTGCAGCAAGGNAGAGCTTGCTGGCAGGGTGGCAAGAGTGGCTTGCCACCCCAACTGGGAGTGTGTGGGTGCGTGTGAACCTACCCGGGACACGAGAGAGGCTCGTTTCGTCCGATGAGGAGTCCTGGGGTAGGAGTGGTGTGTGTATGTGTGTGAATGTGGGAGCCTAACTAGGCTCACCCGGGACACGAGAGAGGCTCGTTTCGTCCGATGAGGAGTCCTGGGGCAGGGAAGGTGTGTGAAAGAGACGGTCTCGGGAGAGGCCAATGCGGGGAGTGACGTGGGGAGGCACAGATCCCTTAGCGCGGGCTGTGTGCTCCGAGGCGAGTGCGGGGGAAATCAGACCTAGGACGCTGCATACGGCTGATAGGACCAGCTCCACGGCCGCAGCAGGCTGTGACAGGGGAAGGCACGTTCCTGGCTAAGCAGCGTCCGAAACTCCCGTAATAGGACCCGGTCTGGTGGACCCGAGAGTGAAAGTGAGAGTGAAAGTGCGCCGCAAGGGAGGAAATGGGAGGGAAAGCGTCGAAACCGACTCCTTTGGAGTGCATGATAAAGAATTTTAAAAAAGGATTTAGAGGTGATTATGGGATGAAACTGGATGCTCAAAAGTTAAGGACATACTGTGAANTAGANTGGCCCGCTTTCAATGTGGGGTGGCCCNCCGAAGGCACAATAGACAGGGAATTAATTGGCCGTGTGTTTAAGGTGGTCACTGGAGTCGGAGGACAACCAGGACACCCAGACCAGTTTCCCTATATNGACTCTTGGCTCAATGTGGCACAAACTCGCCCCAAGTGGCTACAGCCCTGCCTAGAGGGATATTGCAAGGCATTAGTGGCTCGGGCAGCCCAACCAAAGGAAGCAGAGGAACCTAAAGCCCCTAGCGTCTCCCAGGAAAAGGAATCCCCGAAGCCTCAGCCGAAACCAGTTCTTCAGGCCCCACCTGAGGAAAGGGAATGTCCGCCCCCATATATGTGCCAGTCTACCCGTCTTTGGCCAGAATAAGGCAGGAGGCAGAGTCAGGAGCATCCGGAGAGTCGGGCTCGGAGGAAAGTGAGGCTCAGTCTCCCCCGACCCCAGAGGAACAGAAGCCCCCGTTAGAAAAAAACAAGGAAGATGGACAGGGCGAGGCAGCTGGGCGCCTCCGCTCAGGCCGACCACGGGCTTTGCAGATGCCACTTCGAGAGACCAGGACACAAGTTTATGATGACCAGGGGCAGATACAAGGTGGCCCTAGGCTTTATGTTTATCAGCCTTTCTCCACTACTGATCTCTTAAATTGGAAACAGCACGCCCCCTCCTATACAGAAAAGCCTCAGGCTCTCATTGATTTGGTGAATTCTATTATTATGACACATAACCCGACCTGGCCGGATTGTCAACAACTTTTGCTAACTTTATTTAATACAGAGGAGCATAGGAGAGTTAATCAGGCAGCTCTCAGCTGGTTAGAAGGGGAAGCCCCAGAGGCCACCCCTAACCCACGCCAGTTCGCCGTGGAGCGATACCCAAATGAGGACCCTAACTGGGACCCAAATGAGGCAGGGGACATGGAACGGCTGCAGCTATATAGAAAGGCACTCCTGAACGGGATAAAAGCAGGAGGAAGGAAGGCAATGAATATGAGTAAAATATCAGAAGTGCGCCAAAAGCCTGACGAAAGCCCAAGTGCATTCTATGAAAGGCTTTGTGAGGCATATAGGCTGTACACTCCAATTATTCCAGAGGCTCCTGAAAACCAAAATATGATAAATATGACCTTTGTCAGGCAAGCTCAGGGAGACATAAGACGAAAGCTTCAGAAGCTGGAAGGCTTTGCAGGGAAAAATATTAGTGAACTCCTGGAAATAGCAAACAAAGTATACATAAACCGGGAAGAAGAGGCAGAGAGAAAGGAAGAAAGAAAAACCAGAAATAGAAACAAAGAGACGGCTCAATTTATAGCTGCTGCACTAGCAGAAAGTAACCCTGGATTTGCTAGAGGGCGTGGCCGAGGCAGAGGCCGAGGAAGAGGGCAGACAAGACCGGGAGANGAAAGCCGGTCCCGGTTGGACAGGAACCAATGTGCAAGGTGCAGGCAAATGGGCCACTGGAAAGATGAGTGCCCCGAAAAGGAAAAGGATGGAGATGATGGTCAATGGTCTAACACCCGAGTGCGGCGTTCGGTTGCTAGTCGTGGTGCTTCAAAGGCAGATCCTGATCTGATCGGCTTAGCGGGGGCCGAGAATTTTGAGGACTGAGACAGACCGGGCTCCATCTTTTTAGGCCCCGGGGAGCCTATGGTCTCTATGGAAGTAGGGGGCCGATTAATGGATTTTTTGGTCGATACTGGTGCTGATTTCTCTGTGGTAACTCACCCAATTAGCCCCCCCACAAAGAACTGTGCTACTATCGTAGGGGCTACTGGGGCCAAAGAAAAGAGACCTTTTTGCAAATCCAGGAGATGTGTTATTGGGGGACAAGAAGTGCAGCATGAGTTTCTATATATGCCAAATTGTCCAGTGCCCTTGTTGGGGAGAGACTTACTCCAGAAACTGCAGGCACAAATTTCCTTTACACCTAAAGGGAATATGACNCTGGAGTTTGGAAAGTCNAAGGCAATGGTATTGACTCTAACTGTCCCAAGGGCTGAGGAATGGCGGCTCTATGAACTGTGTGCCAGAAGGCCGCCGGAGCCGGACCTACACAATATGTGGGGAATGCTTTTCAAGGTACCAGGTGTATGGGCTGAGGACAACCCCCCTGGACTTGCTGCAAACAGACCCCCGGTGGTAGTAGAGCTTAACCCTCATGCTGCCCCGGTACGAGTCCGTCAATACCCACTACCCAGAGAGGCAATTGATGGCATAACAAAACATCTAAATCGGCTCTATGAACATGGGATTATAGTAAAATGCAAGTCCTCNTGGAATACTCCTCTGCTGCCCGTGCGCAAGCCAAATGGTGAATACAGGCCAGTGCAGGACCTCCGGGCGGTAAACAAGGCCACTGTCACTATCCATGCCATAGTACCCAACCCATACACAATGTTGGGACAGATTCCTGCTGANGCCACNTGGTTCACGTGTCTGGACTTAAAGGATGCCTTCTTTTGCTTGAGGCTTGCTCCCCAAAGTCAGCCTATATTTGCCTTCCAGTGGGGGCAATCGCAATATACCTGGACAAGGCTGCCGCAAGGGTTTAAGAATTCTCCCACTATCTTCGAGGAGGCTTTGGCTACCGACCTTGAGGCTTTTGCGCCACCTAGTGACAATTGTGTGCTATTACAATACATTGATGATTTGCTATTCGCTGCCCCCANGAGGGAGGAATGCCTCCAAGGAACAGAGAGGCTTCTTCACCTGCTGTGTGAAGCTGGTTACAAAGTGTCCAAGGACAAGGCAAAAGTCTGTTTTCGGGAGGTTGGATATCTAGGATTCATGGTATCCCAAGGCCAGCGCAGGCTTGGAAGTGCACGCAAGGAGGCTGTATGTGCATTGCCCACCCCAGTTACAAGGCGGCAGGTCAGGGAATTTCTAGGCGCGGCGGGATTCTGCCGAATCTGGATTCCAAACTTCTCCCTTATAGCAAGGCCCTTATATGAGGCTACCAAAGGAAAGGAAAGAGAGCCCCTCCTATGGGAAAAGGAACAGGAAAAGGCCTTCAAGGATATAAAGGAAGCTCTCATCCAGGCCCCGGCGCTAGGGTTGCCAGATGTAAAAAAGCCCTTCTTTTTGTATGTGGATGAACGAAAGGGAATGGCAGTCGGAGTCTTAACTCAGTTGTTGGGCTCTTGGCATCGGCCGGTAGCATACTTATCCAAAAGACTGGACTTGGTGGCCTTAGGTTGGCCCCACTGCCTCAGGGCGTTGGCAGCTACCGCAATCCTTATAGAAGATGCCAACAAGCTAGCCCTAGGTCAGAAGTTAATAGTTCGGGTGCCACACGCTGTAGTCACCTTAATGGAGCAAAGAGGACATCGTTGGCTGTCCAACTCTAGAATGCTAAAGTATCAAGGGCTTCTGTGTGAAAATCCCCAGATAACACTAGAGACTGTAAATACCTTGAACCCAGCTACCCTGCTGCCTGTGGAGGAACCCGATTGGAAGGACGGTGGGTTGCCTCACTGCTGGCAGGACCTTCCCCACTGTTGCATAAATACGGTGGACGAAGTGTTCTCGAGCCGGGAAGATCTCAGAGATACCCCCTTGGAGAGCCCAGATGTTGAATACTTCACTGATGGTAGCAGTTTCATAACAGATGGGGTGCGATATGCAGGGTATGCAGTAGTGACCCAACACTCGGTGGTCGAGGCTCAAGCCTTACCTTCTGGGACTTCCGCTCAGAAGGCTGAATTAATAGCATTAACCAGAGCACTGTTATTGGCCAAGGGGAAGAAAGTAAACATATATACTGACTCAAGATATGCTTTTGCAACCCTGCACGCCCATGGGGCAATATACAAAGAGAGAGGACTTTTGACTACTGAAGGAAAAGAAATAAAAAATAAAGAGGAAATTTTGCAATTATTAGAAGCCGTATGGGCTCCAGAGAAGGTGGCTGTCATTCATTGCAAAGGACACCAAATCGGGAAAAGCTATGAGGCGCAGGGCAACAGAAAGGCAGACCGAGAGGCTCGGCGGGCAGCAATGAGCAAGGCTTTACCTGAAGAAAGAACTCTAGCAATGCCTCTCCTTATAGAGCCCCCTTTGCCGGAGGTACCCAATTACTCTTCAAGTGAAAAAGCTTGGTTTGGTCAGGAAACAGGAAAATATATTAAAGGTGGATGGTGGCTGTTCTCTGACGGGAGGCTAGCCGTCCCAGAGACAATAGCCCCAAGGTTTGTGAAGCAGATCCATCAAGGAACACACATTGGAAGGACGGCCCTAGAGACTTTGATAGGTCGGCACTTCTATGTGCCACGGCTCTCTGCCATCACCCGTGCTGTTTGTGAACAATGTCTATCCTGTGCCCGGAATAATCCAAAACAAGGACCTACTCGACCCCCAGGAATTCAGGAAACGGGAGCTGTGCCTTGTGAGAACCTGCTTGTAGACTTTACCGAGTTGCCTCGAGCAGGAGGTTACCGGTATATGCTAGTGTTTGTTTGCACCTTCTCGGGGTGGGTTGAGGCCTTCCCCACCAGGACTGAAAAGGCACGAGAGGTGACAAAGGTGCTACTAAAAGACATCATACCAAGATTTGGGTTGCCTTTAACCCTAGGATCAGACAATGGTCCTGCATTTGTGGCAGAAGTAGTACAACAGCTGACTCAACTTTTAAAGATCAAATGGAAACTGCACACAGCCTACTGACCACAGAGTTCAGGGAAGGTGGAACGGATGAACCGGACACTCAAACAGCTACTAAAAAAGTTTTGCCAGGAAACTCACTTACGATGGGATCAGGTCTTGCCCATGGTCCTCCTCCAGGTCAGGTGTACACCTACAAAACAAACTGGGTATTCGCCCTATGAAATATTGTTCGGAAGGCCACCCCCAATCATTAATCAAATTAGAGGGGATTTAAAGGAGTTAGGAGAGCTAACCCTTAGAAGACAGATGCAGGCTTTAGGAGTGGCAATGCAGGAGGTGCANGGCTGGGTAAGAGAAAGGATACCTATAAGTCTAACAGACCCAGTGCATCCACATAAGCCGGGGGACTCTGTCTGGGTTAAAAGGTGGAATCCAACNACCCTGGGACCCNTACGGGATGGGCCCCATATTGTAATCATGTCTACTCCCACTGCTGTTAAAGTTGCAGGTGTCACACCTTGGATTCACCATAGCCGGCTGAAACCAGCGGCAGCAGTGACTCCCGACGACGACCAGTGGATTAGCCAACAAGACCCAGATCGCCCCACCCGAATAGTCCTACGGCGAAACCCAACCACCGGTAAGAAGGACAACTGCCCTGCTCTGACCACACCGGAGGCTGGTCAGTCTACGCACGGCTGAAGCTTGAGGATCCTGCAAGCTCTGCTCTAGTCACATCCCGGAAGCTGACTAGTCTACGCACAGCCGAAGCTAAGAGGACCATCTCCGGATAAGTAAATGTGGATACAATTTATAAGCCTAGTTATAATTCTGTCAATACTGATTGTTCTGTTGTTACGTTATTACTGCAAATGCTGCAAATGTCTATGCCCAGAGGAAGGTTTGCCATGCCCATGTGTAGTGTAAGCATGTTTCTATTACATACACTGATGTTGTTACCATTTCTGCCTATACTAAAAGGGGAGAAATCTCTAGAAGGATGCCCACACTGTGTACACACTACCTGGGTAAGGAATACCATAGTTAAAACTCTACTGTACCATACCTACTATGAATGTACAGGAACCAAGTTAGGAACCTGCACATACAACCAGACCACCTATTCAGTCTGTGACCCAGGAAATAATCAGCTATATGTATGTTATGACCCTAAGCTCTTACCCTATGAATTCTGGTTTGAGGTACATATTAAATCAGAGAGAGAAAAAGAAGGAGAGCTTATAGCTCGAACCAAAGAAGCCCCTCCCTCCTATAAAGGGCCTATTTCCTTGTACTTTGATGCCTGCCATGCCGCATATGTTCATAATCCTAAAAAACCAGAAGCAGTCTGCAATGGTTTAACACAAGAGAGGCTTAGCAGCAGCAGCCCTAAACATCTGTACGGAGAACCACAAATCGGATGCCCAGACTGTAACATTCAGTGGTCTACGCTAACACAGCTCCAACACTTATATTCAGGAAGGACTGCTCTGCTAAGTAGTATGTCAACCAAACCAAATTGTAAGACAAGGACATGCAATCCTTTAAATTTTACTATCTTAAAGCCAGAGCTACCTTTTTGGTCTACAGGACAGACAGCACTATTACGAGTTGATAGACAAGGAGCAGGCCTTGGAGTTCCACTACTAATTGTCAAAAAGACTAGAAGGACTCAAATGCGTCCAACCCCGCAATTCCGGGTCCATAAGTCATTCTATAAGCATTTTGATCAGCCAGTGCCCGAGCTTCCCCCATCAACCAAAAACTTATTTGCTCAACTAGCTGAAAACATAGCTGGCAGCTTAGGAATTTCCTCATGCTATGTATGTGGAGGAACTAATATGGGGGACCAGTGGCCATGGGAGGCAAAGGAATTAATGCCACAAGATAACTTCACTTCGCCTAACCCTGCCAGTGAACCAACAGCCTCAGCCAGTGTTTGGTTGTTAAAAACCTCCATAATTGGAAAGTACTGTATCGCCCGATGGGGAAAGGCTTTCACAGAGGCAGTAGGAGAAACAACCTGCCTAGGGCAACAGTATTATGATGAGACTAAAAACAAAACTCTATGGAGAAACGCCCAGAACGACTCCTACTTACCAGATCCAAACCCTTTCTCTCGATTCTCTACTCTAAGCCACTCTTGGCATCAGCTAGAGGCTCCAAATGCTTGGAAGGCACCCTCTGGCCTATATTGGATCTGTGGAGCACGGGCATATCGGCAACTGCCGGCTAAATGGACAGGGGCATGTGTGTTAGGAACAATCAAGCCATCCTTCTTTCTAATTCCTCTAAAGCAAGGGGAACTCTTAGGATATCCAGTTTATGATGAAAATAAAAGAACTAGAAGAAGCATAATCACAAAAATAGACACAAATATCAAAAAGGATGTGGACATAGGAGACTGGAAAGATAATGAATGGCCTCCTGAAAGAATCATTAAATACTATGGGCCAGCTACCTGGGCGCAAGACGGGTCATGGGGGTACCGCACCCCAATCTATATGCTCAACCGCATCATAAGGTTGCAGGCAGTCCTTGAAATTATAACCAATGAAACGTCAAGGGCACTAGATTTATTGGCAATACAAGCAACACAAATGAGAAATGCTATATATCAAAATAGATTGGCTTTAGATTACCTCTTAGCCTCAGAAGGAGGAGTATGTGGAAAATTTAATTTAACCAACTGTTGCCTAGAAATCGATGATAATGGCCGAGCTGTCATGGAAATCACAGCTAGAATGCGCAAGTTGGCCCATGTTCCAGTTCAGACTTGGTCCGGGTGGTCCCCGGATTCCTTGTTTGGAGGATGGTTCTCAACCTTTGGAGGATTCAAAACCCTCATTGGTGGGTTCTTGCTTATTCTTGGCATCTGCCTCATCCTCCCTTGCCTTTTACCCCTGTTTATTAGGAGTATTCAGTCAACTATAGAGGCAATAGTAACCCGACACACTACCGCGCAGTTGATGGCATTAACCAAATATCAGCCGCTGCCAGTAGAAGAAGNAGCTCAGCTCCGCGAAGAGGTGGCAAATAGTGGTGCTTTCTATTAACACCTTTGTTATAAAAAGCACCAAAGGGGGGAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| HERV15 | BPC1 | 6877 | 6900 | + | 17.95 | CAGAGAGAGAAAAAGAAGGAGAGC |
| HERV15 | ZBTB7B | 4708 | 4717 | - | 17.81 | CGACCACCGA |
| HERV15 | CG3065 | 2408 | 2418 | - | 17.72 | GCCACGCCCTC |
| HERV15 | BPC1 | 2310 | 2333 | + | 17.64 | GGCAGAGAGAAAGGAAGAAAGAAA |
| HERV15 | NFKB2 | 1882 | 1892 | - | 17.52 | GGGGCTTCCCC |
| HERV15 | sens | 8392 | 8401 | + | 17.41 | AAATCACAGC |
| HERV15 | BPC1 | 2306 | 2329 | + | 17.36 | AAGAGGCAGAGAGAAAGGAAGAAA |
| HERV15 | SoxN | 3026 | 3036 | - | 17.36 | CAATACCATTG |
| HERV15 | ZNF547 | 6529 | 6541 | + | 17.21 | TGCAAATGCTGCA |
| HERV15 | BPC1 | 6879 | 6902 | + | 17.17 | GAGAGAGAAAAAGAAGGAGAGCTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
