FLAM_A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000143 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Primates |
| Length | 142 |
| Kimura value | 16.55 |
| Tau index | 0.8951 |
| Description | FLAM_A (Free left Alu monomer A) |
| Comment | FLAM_A is a SINE that derives from a single, internally-deleted 7SL RNA. |
| Sequence |
GCCGGGCGCGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGGATCGCTTGAGCCCAGGAGTTCGAGACCAGCCTGGGCAACATAGCGAGACCCCGTCTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| FLAM_A | RPN4 | 10 | 16 | + | 13.80 | GGTGGCG |
| FLAM_A | TEM1 | 93 | 100 | + | 13.75 | GCAACATA |
| FLAM_A | ZNF384 | 117 | 124 | + | 13.57 | AAAAAAAA |
| FLAM_A | ZNF384 | 118 | 125 | + | 13.57 | AAAAAAAA |
| FLAM_A | ZNF384 | 119 | 126 | + | 13.57 | AAAAAAAA |
| FLAM_A | ZNF384 | 120 | 127 | + | 13.57 | AAAAAAAA |
| FLAM_A | ZNF384 | 121 | 128 | + | 13.57 | AAAAAAAA |
| FLAM_A | ZNF384 | 122 | 129 | + | 13.57 | AAAAAAAA |
| FLAM_A | ZNF384 | 123 | 130 | + | 13.57 | AAAAAAAA |
| FLAM_A | ZNF384 | 124 | 131 | + | 13.57 | AAAAAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
