FLAM_A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000143 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Primates |
| Length | 142 |
| Kimura value | 16.55 |
| Tau index | 0.8951 |
| Description | FLAM_A (Free left Alu monomer A) |
| Comment | FLAM_A is a SINE that derives from a single, internally-deleted 7SL RNA. |
| Sequence |
GCCGGGCGCGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGGATCGCTTGAGCCCAGGAGTTCGAGACCAGCCTGGGCAACATAGCGAGACCCCGTCTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| FLAM_A | ZBTB6 | 62 | 70 | + | 15.31 | GCTTGAGCC |
| FLAM_A | h | 13 | 22 | + | 14.94 | GGCGCGCGCC |
| FLAM_A | h | 13 | 22 | - | 14.94 | GGCGCGCGCC |
| FLAM_A | DOF3.6 | 114 | 134 | - | 14.92 | TTTTTTTTTTTTTTTTTTAGA |
| FLAM_A | KLF3 | 4 | 13 | - | 14.43 | CACCGCGCCC |
| FLAM_A | ZNF257 | 48 | 57 | + | 14.34 | GAGGCGGGAG |
| FLAM_A | EREB71 | 4 | 13 | - | 14.22 | CACCGCGCCC |
| FLAM_A | RAV2 | 93 | 100 | + | 14.09 | GCAACATA |
| FLAM_A | E(spl)mgamma-HLH | 12 | 21 | - | 13.84 | GCGCGCGCCA |
| FLAM_A | ZNF263 | 53 | 59 | + | 13.83 | GGGAGGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
