FLAM_A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000143 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Primates |
| Length | 142 |
| Kimura value | 16.55 |
| Tau index | 0.8951 |
| Description | FLAM_A (Free left Alu monomer A) |
| Comment | FLAM_A is a SINE that derives from a single, internally-deleted 7SL RNA. |
| Sequence |
GCCGGGCGCGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGGATCGCTTGAGCCCAGGAGTTCGAGACCAGCCTGGGCAACATAGCGAGACCCCGTCTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| FLAM_A | ZNF135 | 38 | 51 | - | 16.04 | CCTCAGCCTCCCGA |
| FLAM_A | ZNF135 | 70 | 83 | - | 16.03 | TCTCGAACTCCTGG |
| FLAM_A | DOF5.1 | 117 | 135 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| FLAM_A | DOF5.1 | 118 | 136 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| FLAM_A | DOF5.1 | 119 | 137 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| FLAM_A | DOF5.1 | 120 | 138 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| FLAM_A | DOF5.1 | 121 | 139 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| FLAM_A | DOF5.1 | 122 | 140 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| FLAM_A | DOF5.1 | 123 | 141 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| FLAM_A | DOF5.1 | 124 | 142 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
