Eutr2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001206 |
|---|---|
| TE superfamily | MuDR |
| TE class | DNA |
| Species | Eutheria |
| Length | 940 |
| Kimura value | 25.01 |
| Tau index | 0.0000 |
| Description | Ancient interspersed repetitive sequence from eutherian mammals. |
| Comment | Pos 13-125 bp of the 250-300 bp long TIRs are ~8 copies of ATTCGCCGAAARYCA. Full TIRs are shared with a longer element named Eutr2B. Not present in opossum. |
| Sequence |
GGCTCTAGGTCAATTCGCCGAAAATCAATTCGCCAAAAGCCAATTCGCCGAAAATCAATTCGCCGAAAGACCAATTCGCCGAAAGCCAATTCGCCGAAAATCAATTCGCCGAATGACCAATTCGCCAATTTACCGAATTACCGATTCACCAAAAACTTGTTTCTATTAACTACTTATAAAGTTTACAGCAATTCGTGTTGCATGGGATGGTTTCAACAGCCTTTGAGGATTTTTTTCGAAGTTTTCATTTGAGTTTAGTTNAGTTTTAGTTTNAGTTTATTTCCAGTTTCGCCACAGCCGTTTCGCCGTGGCCTGGCCAAAGTTCAGTGTATTTCTAGGTTTTTCTGTACTTTGGGTCTATGACTTTTGGGAATGAGAATTTCTTGTGTATTTCGAATTTCAGGCGTTGTGCATGTCNCGAATGTCAAGGATTTTATAAACGATAGGGCGGGTTTCTCTCTTCCAACACATTTTCAATCCAGTCCACTGCCTTTTNTACTTCTCTTAATTCACGGATTTGTTAACCGGCTCGATCAAATGAATATTTTGCATNTGTTTTAAGCATTTGAGAAGTGCTCAGCGTCTGAAATGTGAAACACACGCGAAATTGACATTCAACTGAGCTGGACTGACAAATCCACTGCGAAATGGCTGGGGTGAAACGGCTACGGCGAAACTAAAACNAAATNAAAACNAGTCAACTAAAACTTCGCAAAAATCCTCAAAGGCTGTTAAAACCATCCCATCCAATACGAATTGCTATAAACTTTATAAATAGTTAAAAGAAACAAGTTTTTGGTAAATTGGTAATTTGGCGAATTGGTCATTCGGCGAATTGGCTTTCGGCGAATTGGCTTTCGGCGAATTGGTCTTTCGGCGAATTGATTTTCGGCGAATTGGCCATTCGGCAAATTGGCTTTCGGCGAATTGNCCTAGAGCC
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr2 | WRKY42 | 696 | 703 | - | 12.57 | AGTTGACT |
| Eutr2 | Pparg::Rxra | 314 | 326 | + | 12.47 | TGGCCAAAGTTCA |
| Eutr2 | POU5F1 | 546 | 552 | - | 12.44 | ATGCAAA |
| Eutr2 | Nr2e1 | 360 | 368 | - | 12.41 | AAAAGTCAT |
| Eutr2 | grh | 153 | 162 | - | 12.37 | AAACAAGTTT |
| Eutr2 | grh | 786 | 795 | + | 12.37 | AAACAAGTTT |
| Eutr2 | WRKY6 | 696 | 703 | - | 12.36 | AGTTGACT |
| Eutr2 | HNF4G | 346 | 354 | - | 12.33 | CAAAGTACA |
| Eutr2 | DOF3.6 | 769 | 789 | - | 12.33 | GTTTCTTTTAACTATTTATAA |
| Eutr2 | ZNF324 | 199 | 212 | + | 12.33 | TGCATGGGATGGTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
