Eutr2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001206 |
|---|---|
| TE superfamily | MuDR |
| TE class | DNA |
| Species | Eutheria |
| Length | 940 |
| Kimura value | 25.01 |
| Tau index | 0.0000 |
| Description | Ancient interspersed repetitive sequence from eutherian mammals. |
| Comment | Pos 13-125 bp of the 250-300 bp long TIRs are ~8 copies of ATTCGCCGAAARYCA. Full TIRs are shared with a longer element named Eutr2B. Not present in opossum. |
| Sequence |
GGCTCTAGGTCAATTCGCCGAAAATCAATTCGCCAAAAGCCAATTCGCCGAAAATCAATTCGCCGAAAGACCAATTCGCCGAAAGCCAATTCGCCGAAAATCAATTCGCCGAATGACCAATTCGCCAATTTACCGAATTACCGATTCACCAAAAACTTGTTTCTATTAACTACTTATAAAGTTTACAGCAATTCGTGTTGCATGGGATGGTTTCAACAGCCTTTGAGGATTTTTTTCGAAGTTTTCATTTGAGTTTAGTTNAGTTTTAGTTTNAGTTTATTTCCAGTTTCGCCACAGCCGTTTCGCCGTGGCCTGGCCAAAGTTCAGTGTATTTCTAGGTTTTTCTGTACTTTGGGTCTATGACTTTTGGGAATGAGAATTTCTTGTGTATTTCGAATTTCAGGCGTTGTGCATGTCNCGAATGTCAAGGATTTTATAAACGATAGGGCGGGTTTCTCTCTTCCAACACATTTTCAATCCAGTCCACTGCCTTTTNTACTTCTCTTAATTCACGGATTTGTTAACCGGCTCGATCAAATGAATATTTTGCATNTGTTTTAAGCATTTGAGAAGTGCTCAGCGTCTGAAATGTGAAACACACGCGAAATTGACATTCAACTGAGCTGGACTGACAAATCCACTGCGAAATGGCTGGGGTGAAACGGCTACGGCGAAACTAAAACNAAATNAAAACNAGTCAACTAAAACTTCGCAAAAATCCTCAAAGGCTGTTAAAACCATCCCATCCAATACGAATTGCTATAAACTTTATAAATAGTTAAAAGAAACAAGTTTTTGGTAAATTGGTAATTTGGCGAATTGGTCATTCGGCGAATTGGCTTTCGGCGAATTGGCTTTCGGCGAATTGGTCTTTCGGCGAATTGATTTTCGGCGAATTGGCCATTCGGCAAATTGGCTTTCGGCGAATTGNCCTAGAGCC
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr2 | FUS3 | 410 | 416 | - | 13.75 | ACATGCA |
| Eutr2 | HNF4 | 314 | 327 | - | 13.51 | CTGAACTTTGGCCA |
| Eutr2 | VIT_17s0000g10420 | 520 | 527 | + | 13.43 | GTTAACCG |
| Eutr2 | rib | 711 | 719 | + | 13.36 | CGCAAAAAT |
| Eutr2 | ZBTB6 | 1 | 9 | - | 13.36 | CCTAGAGCC |
| Eutr2 | ZBTB6 | 932 | 940 | + | 13.36 | CCTAGAGCC |
| Eutr2 | KLF15 | 446 | 453 | - | 13.19 | ACCCGCCC |
| Eutr2 | FOXH1 | 385 | 392 | - | 13.12 | AATACACA |
| Eutr2 | JUB1 | 303 | 309 | - | 13.11 | ACGGCGA |
| Eutr2 | JUB1 | 668 | 674 | + | 13.11 | ACGGCGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
