Eutr10
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001233 |
|---|---|
| TE superfamily | ERV3 |
| TE class | LTR |
| Species | Eutheria |
| Length | 790 |
| Kimura value | 34.25 |
| Tau index | 1.0000 |
| Description | Ancient interspersed repetitive sequence from eutherian mammals. |
| Comment | TGT...ACA termini, probable 5 bp TSDs, and ERVL-like ATTAAA poly A signal at the right place suggests this is an LTR. ERVL is a very uncertain assignment. Present at orthologous sites in elephant and humans, absent from opossum. |
| Sequence |
TGTNTTGGTAGGGGTCCCCGGGACAATCCCCTTTNTGGGGCCTGGGGCCCTCCAAGCAAATGCCACTTTGTAACGAGACTTTCTTTCTTTGGTCACCAGACTGTCCCCTAAATTAGTTGAAGCCTGTAGGCCTTAAATATAAAGCTGGCTGATGCAACTTGATTATAATGCAGCAGTTTGAATTTAGGCGCNAATGCTATGTTTGAAATGTAAGAGTGTGATTGGCTTTTAGCNATATATTTTAAAAGGATTGGTGGGTTACTTGTGCCTGGGCAGCCCAGCCCCTGAATGCCTGGCCACTCTCGATAAGAGTCAGGACTACACCCAGCTGGCCCCATAAAAGGGAGGGCCCGATGGCCGTCTCTCCGGGGCAGCCTGAGGCAACAGGACACGCACCCGGTCCGCGCTGCTGCTGTTGCACCTGCTGAGACCCGCTGACGGAAGTGCTGTCCCTCCCCTGACCGGACGAGGAAGGACCCAGTTTCCTCGGGGACCCGCAGGCTGCCGGAACAACTCCNCCCCCCCTTCTCCGCCATCAGCGTGCGCCGNACCCTGCCTGGAGTGGTGAGAAACTGTAACCCTTNACTCCCCTCTTTGGCTAGGGATCCTCCCCTTTCTTCCCCACTGGGTCTNGGGAGGACGGGAGGCGGCATTAAAGCTTGCTTNTGTTTTACCCATACCTTGTGAGTCTGTGTTCTCTGTGTAAAGGCCCACTCATTTAGAGGAAAAAGAACCTGCTCTTAGTTCCACCTCTGGAACTAGAAAATTAGTCTTTAATCAGACTAATACA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr10 | EWSR1-FLI1 | 634 | 651 | + | -3.01 | GGGAGGACGGGAGGCGGC |
| Eutr10 | IRF8 | 568 | 580 | + | -4.37 | AGAAACTGTAACC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
