EuthAT-N1
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001168 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 335 |
| Kimura value | 28.51 |
| Tau index | 0.9795 |
| Description | Ancient hAT DNA transposon from eutherian mammals. |
| Comment | 8 b TSDs. Bit improved (original entry 91% similar to pos 1 -325). Very similar to hAT-N1_MD in marsupials, but a different non-autonomous deletion product. At orthologous sites in all eutheria, but apparently absent in marsupials. |
| Sequence |
CAGAGCCGTAACTAGGGCGGGGCGACCGGGGCTTTGCCCCAGGGCACCGAAATTTAGAGGGCGCAAANATTTTAAATAATGATTTTAAAAGATTGTGCAATTTTAAAATTTGTTACATTTACATGTTGACAGCACATGCACTCCTTCAGCAGCGTAGAAACAACTGAGCTTAGCACCTAGTTAGCAAGAATAATTAGTTAAAATAGGAAGCTACCAGATGGCGCGCATTGTTAATAACACCCATCTGTGAGCCACATCATGAATTACAAAGTTGATTTGAGGGCGCGTTTCNTGCTACTTGCCCCGGGCACCAAAATTGCCAGTTACGGCTCTGC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EuthAT-N1 | KLF7 | 15 | 22 | + | 15.72 | GGGCGGGG |
| EuthAT-N1 | KLF1 | 15 | 22 | + | 15.53 | GGGCGGGG |
| EuthAT-N1 | TFAP2A | 36 | 46 | - | 15.44 | TGCCCTGGGGC |
| EuthAT-N1 | SP4 | 14 | 22 | + | 15.12 | AGGGCGGGG |
| EuthAT-N1 | SP2 | 14 | 22 | + | 14.96 | AGGGCGGGG |
| EuthAT-N1 | Xrp1 | 92 | 101 | + | 14.93 | ATTGTGCAAT |
| EuthAT-N1 | KLF12 | 14 | 22 | + | 14.93 | AGGGCGGGG |
| EuthAT-N1 | TCX6 | 101 | 115 | + | 14.84 | TTTTAAAATTTGTTA |
| EuthAT-N1 | TBXT | 235 | 250 | + | 14.79 | TAACACCCATCTGTGA |
| EuthAT-N1 | Neurod2 | 241 | 248 | - | 14.69 | ACAGATGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
