Eulor11
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000123 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 552 |
| Kimura value | 32.76 |
| Tau index | 0.0000 |
| Description | Eulor11 (Euteleostomi-conserved low frequency repeat 11) |
| Comment | Putative DNA transposon (assignment unclear). Identified in both mammals and birds. Reconstructed from chicken DNA. Like most Eulor-type repeats, this repeat has a secondary structure (imperfect hairpin) followed by a 50 bp "tail." The tail region is less conserved in mammals than the secondary structure. Over 300 copies in alligator. Termini uncertain; no similar TEs. |
| Sequence |
TGCTCTCANTACGATAGCTTTCAAAATCTAATTTTGCCCCCTTTTAAATGTGCTAAATATAAATGCAGAAACAAAGAAATATACATTGATAAGTAAAGAAGCACAGGTGTACCTTGCAGGCAGTATAAAAAAAGTCCTTTAAGAGGTCTTGAACCAGTGTCCCTACGTGCTTTATACTGCAGCCCAATGTGCAGCCACTAGACCACCCCACCACAGGTAAGAAATGAGAAATTTTGAGGGCTATTGAACACTGCGAATTTTCACAGTGGATCAGCACAAAGTTATTTAGCACAGGTGTTTCTGTAATTGTGATACATTGGGAAAATTCACAGTGTTCAATGGCCCTCAAACTCACACTTCCACCTGCGTGGTGCGGTGGTCTAGTGTTAGTACACTGGGCTGTAATATAAAACATGTAGGAATACTGGCTGGCTCAAGACCTGCTAAAGGTTTTTCCTTATACCGTCCGTGCTTCTTTGTTCGTCTGGATTTCTTTGTTTCTGCATTTATATTTAGCACATTTANAAAAAGGGGCGAAACAGATTTTNCAGG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor11 | GATAd | 87 | 93 | - | 12.32 | CTTATCA |
| Eulor11 | Hand1::Tcf3 | 483 | 491 | + | 12.31 | GTCTGGATT |
| Eulor11 | grn | 87 | 93 | - | 12.30 | CTTATCA |
| Eulor11 | DMRT3 | 310 | 316 | - | 12.16 | TGTATCA |
| Eulor11 | ASCL1 | 360 | 368 | + | 12.15 | CCACCTGCG |
| Eulor11 | SOX4 | 474 | 481 | - | 12.15 | AACAAAGA |
| Eulor11 | SOX4 | 492 | 499 | - | 12.15 | AACAAAGA |
| Eulor11 | SOX4 | 70 | 77 | + | 12.15 | AACAAAGA |
| Eulor11 | CTCFL | 36 | 43 | - | 12.13 | AAGGGGGC |
| Eulor11 | TSO1 | 20 | 34 | - | 12.12 | AAATTAGATTTTGAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
