ERVL47
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000119 |
|---|---|
| TE superfamily | ERV3 |
| TE class | LTR |
| Species | Primates |
| Length | 5246 |
| Kimura value | 18.41 |
| Tau index | 1.0000 |
| Description | ERVL endogenous retrovirus, ERVL47 subfamily |
| Comment | Associated with LTR47B2 LTRs. ORF coordinates are roughly: Gag (234-1559), Pol (1560-4955). |
| Sequence |
AATGGCGAGCCAGCCAGGAGGAGCCNGGGAACCAAAGTATGGGCAAGGGGAAGGAAGCATCCGTGGGGGAAATCCCGGGGCGGCCCTCCTCATCTATGTGGGGTGGTGTTGCCCATTTGCTAGATGCCTGTGGACCACCGCGTGAGTACGGGGACGCCCCGAAAACGCCGGAGGGTCTAGAANGCTTGTTAGTAGAAAGCCGTATGACTCACTGTGGTAAGGAAGGTCGCNAGGCGGCGGCAACAGTGGGTTNGCCGCTGTTATGGNCTGTGCGAGTGGCCACAGAAGCGCAGGTAGCAGCTGAGGCGAGGGTAGGAAAGCTAGAGAAAGAATTACAGTTAGAAAGGGATATGAGAACTTCCACGTCTGTGTTAGCGTCTGGTTTGGTGGATAAGCTCGAAACTCAGGAGGCACAGTTGGAAACCGTAGCCTGCCGCTTTGTGCGGCTGGGAGGGAGGAAGCTGCGCCGGCCGAAAGTGCGGGCTGTCCTTGCCAAACCGGACTGGGATGCNAANACCTGGAATTCTTGGGAACCAACTAGTGAGTCAGATGANGACATAGAGGTTANCTCAGAGGAGGAGGATAATTATCCTCCCCTTTTGAGAGCGAGACCGCTCATGCAGCGGAAAGCAAAAGCCCAACACATGCAGCCGGGCAATAACGGACAGCCTTTTCAGGAAACCTTAACTGTCCGAGAGTACACCTCGGCAGGATTATTGGACATAGCAAAAACTTTTAAACAGCTGCCGAGAGAAAGCTTAGCCACATGGATGGTGCGGCTATGGGACACCGGTGGGGATGGCATCTCCCTAGCAGGGAGTGAAGCTGAAAAAATGAGTAATATAACCACCCATCCNGCTTTGAGACAGCATTTGCATAATGCTAGAACTGTCGAGGGNAATCATAGCCTTATGGACTGGATTATCCTGGCCATGAGAGAGGCTTGGCCNAATGAAGGGGACTTCCCGGGTCAGACCCCGGCATGGCGATCTCTGGAGGAAGCGCAGAGCGATTTANGGGAGTTGGGCATGCGNCAGGCCATCTATGCCCAGCAATTTGNAGGACCAGATAAGGCTGTGTTTACCGTGGGCATGAAAAATAAGTTGTTACAAAGTGCCCCCCGGGAGTGGCATGGCCCTCTCATATCCCTCTTGAGCCCCCTTGTGGGACAAGATGTATATGACGTGGGGGAAGCCATNNCTGATCTTGGAGAAACTGAAAAGGGAAGAGATAAGGTCCGACTGGTTACTAAAGGAAAAGGGAAAAAGGGAGAAACCAAGTCTGCTGGACTGAAAAAGGGAGGTCAAAAAGGCCCAGTTAGGATTACCAGGAAACAAATGTGGTATGATCTGATCTCAGCTGGGGTAGACAAAGAGAAAATAGACCGGCAACCCAATGCCATATTAGTGGGCCTTTGGAAAGACCTGACTCCCGATCAACAGTTTAGACCCCTTCCTAGTGCCCCACCAGAAGAGGGAGAAGGAGAAGAAGAAACTCCGCGTAAAAGAACCCCAATCTCTGCGTTCCAGGGGTGGACTCCTCCCCAGCCTAGAGACTAGGGGTGGGGCCAAGGTTGCCTCCGTGTANGAGCAATAGGGGGCGACCAGAGGCCCCATGTGGAGCTCACAATCTATTGGAGTCCAAAAAACAAGCAGAGAACCTTAGCTTTAGTGGGCACAGGTGCAGAATGCACCTTAATTCATGGAAATCCAGAGAGACACCCTGGTAAGTGGGCAGCTATAGATGGTTACGGGGGGCGAACAATCCGAGTGAAACAAACTCCTCTCCTCCTTGGTNTTGGGCGGAGTCCCCCCGCTTACTNTACTGTCTTTATCTCACCTATTCCAGAAAACATCTTGGGTATGGATGTCCTTTTAGGATGCACTTTACAAACATCTGTGGGGGAATTCCACCTATGAGTTTGGGCGGTAAAGGCTATTTTAAGAGGGGAAGCAAAATGGGAACCTGTACACCTCCCTCCCCCACGGCGTATTGTTAATGTGAAACAATACCATCTTCCTGGTGGGATAGAAGAAATCACAGCCACCATACAGGAACTGGCCAAAGTTAATATTATNCGGCCAGCCCAGAGTCCCTTCAACAGTCCTGTATGGCCGGTAAGAAAACCTGATGGCACCTGGCACATGACAGTAGACTACCGGGAACTAAATAAGGTGGTTCCCGAGATACACGCTGCTGTGCCTAATATAACTCAAGTGATAGAGCAAATAATACAAAATATAGGCACTTATCATGCTGTGTTAGATTTGGCTAATGCCTTCTTCAGCATCCCTTTACACCCTGACTCGCAGGACCAATTTGCTTTTACTTGGAATGGCCAACAATGGACATTCCAAGTGTTGCCCCAGGGNTATCTACANAGCCCCACTATTTGTCATGGAATGATTGCTAGAGATTTAACTTTATGTCCACTGCCACCTGCTGTTAAACAGTTTCATTACATTGATGATATTATGCTAACCTCTGAAGACTTGTCATTGCTACAGCAACACCTTGATGCATTGTGCACCCTTCTCCAATCCAGAGGATGGGCCATCAACCCGCAAAAGATACAAGGCCCAGGACCGGCTGTAAAGTTCCTAGGGGTCACTTGGTCGGGTAAGACACGCCTTATCCCAGGCATAGTCATTGACAAAATACAACAATTTTCCATGCCTAAAACAGTTAAACAGTTACAAAGTTTCCTAGGTCTTTTGGGATATTGGCGGGCTTTTATTCCACATTTAGCTCAATGTTTGCGTCCCCTATACCGACTAGTAAAGAAGGGATCTAGTTGGTGCTGGGATAAAGAACAAGAGGAAGCATTTGAGAAGGCTAAANTATTAGTGGCTCGGGCACAAGCCTTAGGTTCCCCCCTTCCCGGGNTACCGNTNTCTTTGGATGTGACCATAAGCCCTGAGGGGACCAGCTGGGCCCTCGGGCAAGTCCAGCATGGGAAAGCGGTTCCCCTAGGATTCTGGTCACANCTATGGAAGGGCGCTGAAACCCGCTATTCCCCGATTGAACAACGGGTCCTGGGGGTATANAAGGCCTTGCGGCAAGTTGAACCCGTAACTGCCGCTTTNCCGGTAACAGNGAAAACGGGTCTCCCTATNAAGGGCTGGANAGAAGGGTTGTTTNCCAGGCCTGNNTCAGCTATTGCCCAGGCCTCCACTTTACAAAANTGGCATGCANACCTGCAACAACGTAGCGCCCTCTCCACGAGTCCCTTGGGAGATGAACTGCATGCTNTCTTAGGGCCAGTACACTATGAGACCAGTGCTGCCCCTATTGTGGAGCCCCCACGGGGGATGCCTCCGATGNTACACGAAGGCACGGCCCCCATTCCTGAAAACGCTTGGTACTCGGATGGGTNNAGCCGAGGTAACCCTTGTGTATGGACGGCAGTAGCTGTACAACCGCAGACAGATACTATCTGGTTTGAGATGGGAATGCAGCAAAGCAGTCAATGGGCAGAACTCCGAGCTGCATGGTTGGTTTGTACCCATGAGCCATGGCCTATAGTTCTCTGTACAGATAGTTGGGCAGTATTTAAGGGTCTTACAACTTGGCTTGCCCAGTGGGCCCGGGATGACTGGCATGTACTTTAAAAACCCTTATGGGGAGCTGCCATGTGGAAAGACATTTGGGAAAGGCTACAAGAACCCACTGCGAGCCTAATTGTGTATCATGTTTCAGCACACTGGTCAGATTCACCTCCCGGTAACATGGAGGCTGATACCCTAGCAAAAATTAGAACACTGGCTCCCTCGCAATCNTCTGAGCTAGCTGATTGGGTACATAAACACAGTGGGCATCGCAGTGCACGAGTGGGCTGGCAAATAGCAAAGGGAGCAGGATTGCCCCTCCGCTATGCAGATTTAGCGGCGGCAGTAACAAACTGCTTAGTTTGCTCCCGCCTGCGCCCCCGCCGCATCCCACATACACCTGGACACATACATAAGACAGCCGCCCCTGTGAGAGACTGGCAGATAGACTACATCGGACCCCTGCCAGTAAGCTTGGGACAAAAGTATGCACTAACATGTGTAGACACTGCCACGGGATTGTTGCAGGCCTTCCCTTGCAAAAGGGCAAACCAAACAGCCACCATTAAGGGCTTGGAGCAACTCAGTGTCATGTATGGATACCCTCGATGCATTGATAGCGACCGAGGCACGCATTTCACTGGACATGATGTCCAAGATTGGGCACATGAAAAGGATATAGACCGGAGATTTCACTTGCCATATAATCCCCAAGCGGCAGGGTTGATTGAAAGGAAAAATGGCATTTTGAAGGCACAACTGCGAGCACTTTCACAATCCAATACCTTGCATGGGTGGGCGAAGGTTTTGCCTCAAGCCATTAGAAACCTTAATTCGGTTGAGACAAATACGGGGCTGGCACCATACCAATGACTCGGGACCACCGCAGAGGAGGGTCCATTAACCATAGTTGTAAAGAAAGTCCGACCAGACGCATTTCTACCGGAGCTGATAAAAGGCCAATGGCAAATGTTATTTGGGACTCCCCAAGACCTTGAGCCAGGGGAGGGGACACTTGAATGGGGGTTGGACTGGCAACTTCCCCCAGGTTGGATAGGGTATTTCTTGCCAGAGAGCGAGGAATTCCCCGGCCAACTAAAGTGGTCTCCGTTGATCCTGTTGGAGTCTGGGCCAAAACGCTCCACATACCAATACACTGGAACACGGCCCCTTTTAAAGGGCACTCTGGTCGGCCGTTTGACATGGTCCTTTGCTGCCCCTGTAACCTTNACAGATAATACCGGCACCTTCGCCCTTAGGCAACATGTTTGGTATGCACCCCCAGCCCATAATCCTTNGGCTGCCTATGTCCTAACTAACAGAGATGAAGCTACCACAGTCATTTTGCTTGATGGGGAAGAACTGCCCCGCCAAGTACCTACTAAACACTTGTATTTCCGCCCATAGTCTTCTGTTCCTGTTGCTGCTCTGCCCTACAAAAGCCTCTTGGTTTGGATCCTGGGGAACATGGTGGCAAAAGGCATTATTAATTCTGTGTCTTATACTTGGCATAGGTATCATTGCCTGTTGTTGTCTGTATTGTTGCTGCGGCCTCTGCTTACAAGTAGAAAACAAATTGATGCAACGTGTCACCCACGCCATGAAATGACTGCAGCACCCCTCNCCTCTAAAGGCTCAGGGACCATCGCGGAAGAGGNGGGCGCGTGAGATTGTAAGAGCCGGATTAGAGGGGTGGAG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERVL47 | TFAP2B | 2913 | 2925 | - | 16.54 | TCCCCTCAGGGCT |
| ERVL47 | Gfi1B | 2035 | 2044 | + | 16.50 | AAATCACAGC |
| ERVL47 | TFAP2A | 2913 | 2925 | - | 16.46 | TCCCCTCAGGGCT |
| ERVL47 | Zm00001d020595 | 233 | 242 | + | 16.42 | GGCGGCGGCA |
| ERVL47 | TCP23 | 3581 | 3588 | - | 16.36 | GGGCCCAC |
| ERVL47 | CTCF | 2433 | 2447 | - | 16.33 | AACAGCAGGTGGCAG |
| ERVL47 | ZBTB6 | 4541 | 4549 | + | 16.28 | CCTTGAGCC |
| ERVL47 | TCP3 | 4425 | 4432 | + | 16.23 | GGGACCAC |
| ERVL47 | TCP24 | 4425 | 4432 | + | 16.21 | GGGACCAC |
| ERVL47 | TFAP2B | 2913 | 2925 | + | 16.18 | AGCCCTGAGGGGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
