ERVL47
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000119 |
|---|---|
| TE superfamily | ERV3 |
| TE class | LTR |
| Species | Primates |
| Length | 5246 |
| Kimura value | 18.41 |
| Tau index | 1.0000 |
| Description | ERVL endogenous retrovirus, ERVL47 subfamily |
| Comment | Associated with LTR47B2 LTRs. ORF coordinates are roughly: Gag (234-1559), Pol (1560-4955). |
| Sequence |
AATGGCGAGCCAGCCAGGAGGAGCCNGGGAACCAAAGTATGGGCAAGGGGAAGGAAGCATCCGTGGGGGAAATCCCGGGGCGGCCCTCCTCATCTATGTGGGGTGGTGTTGCCCATTTGCTAGATGCCTGTGGACCACCGCGTGAGTACGGGGACGCCCCGAAAACGCCGGAGGGTCTAGAANGCTTGTTAGTAGAAAGCCGTATGACTCACTGTGGTAAGGAAGGTCGCNAGGCGGCGGCAACAGTGGGTTNGCCGCTGTTATGGNCTGTGCGAGTGGCCACAGAAGCGCAGGTAGCAGCTGAGGCGAGGGTAGGAAAGCTAGAGAAAGAATTACAGTTAGAAAGGGATATGAGAACTTCCACGTCTGTGTTAGCGTCTGGTTTGGTGGATAAGCTCGAAACTCAGGAGGCACAGTTGGAAACCGTAGCCTGCCGCTTTGTGCGGCTGGGAGGGAGGAAGCTGCGCCGGCCGAAAGTGCGGGCTGTCCTTGCCAAACCGGACTGGGATGCNAANACCTGGAATTCTTGGGAACCAACTAGTGAGTCAGATGANGACATAGAGGTTANCTCAGAGGAGGAGGATAATTATCCTCCCCTTTTGAGAGCGAGACCGCTCATGCAGCGGAAAGCAAAAGCCCAACACATGCAGCCGGGCAATAACGGACAGCCTTTTCAGGAAACCTTAACTGTCCGAGAGTACACCTCGGCAGGATTATTGGACATAGCAAAAACTTTTAAACAGCTGCCGAGAGAAAGCTTAGCCACATGGATGGTGCGGCTATGGGACACCGGTGGGGATGGCATCTCCCTAGCAGGGAGTGAAGCTGAAAAAATGAGTAATATAACCACCCATCCNGCTTTGAGACAGCATTTGCATAATGCTAGAACTGTCGAGGGNAATCATAGCCTTATGGACTGGATTATCCTGGCCATGAGAGAGGCTTGGCCNAATGAAGGGGACTTCCCGGGTCAGACCCCGGCATGGCGATCTCTGGAGGAAGCGCAGAGCGATTTANGGGAGTTGGGCATGCGNCAGGCCATCTATGCCCAGCAATTTGNAGGACCAGATAAGGCTGTGTTTACCGTGGGCATGAAAAATAAGTTGTTACAAAGTGCCCCCCGGGAGTGGCATGGCCCTCTCATATCCCTCTTGAGCCCCCTTGTGGGACAAGATGTATATGACGTGGGGGAAGCCATNNCTGATCTTGGAGAAACTGAAAAGGGAAGAGATAAGGTCCGACTGGTTACTAAAGGAAAAGGGAAAAAGGGAGAAACCAAGTCTGCTGGACTGAAAAAGGGAGGTCAAAAAGGCCCAGTTAGGATTACCAGGAAACAAATGTGGTATGATCTGATCTCAGCTGGGGTAGACAAAGAGAAAATAGACCGGCAACCCAATGCCATATTAGTGGGCCTTTGGAAAGACCTGACTCCCGATCAACAGTTTAGACCCCTTCCTAGTGCCCCACCAGAAGAGGGAGAAGGAGAAGAAGAAACTCCGCGTAAAAGAACCCCAATCTCTGCGTTCCAGGGGTGGACTCCTCCCCAGCCTAGAGACTAGGGGTGGGGCCAAGGTTGCCTCCGTGTANGAGCAATAGGGGGCGACCAGAGGCCCCATGTGGAGCTCACAATCTATTGGAGTCCAAAAAACAAGCAGAGAACCTTAGCTTTAGTGGGCACAGGTGCAGAATGCACCTTAATTCATGGAAATCCAGAGAGACACCCTGGTAAGTGGGCAGCTATAGATGGTTACGGGGGGCGAACAATCCGAGTGAAACAAACTCCTCTCCTCCTTGGTNTTGGGCGGAGTCCCCCCGCTTACTNTACTGTCTTTATCTCACCTATTCCAGAAAACATCTTGGGTATGGATGTCCTTTTAGGATGCACTTTACAAACATCTGTGGGGGAATTCCACCTATGAGTTTGGGCGGTAAAGGCTATTTTAAGAGGGGAAGCAAAATGGGAACCTGTACACCTCCCTCCCCCACGGCGTATTGTTAATGTGAAACAATACCATCTTCCTGGTGGGATAGAAGAAATCACAGCCACCATACAGGAACTGGCCAAAGTTAATATTATNCGGCCAGCCCAGAGTCCCTTCAACAGTCCTGTATGGCCGGTAAGAAAACCTGATGGCACCTGGCACATGACAGTAGACTACCGGGAACTAAATAAGGTGGTTCCCGAGATACACGCTGCTGTGCCTAATATAACTCAAGTGATAGAGCAAATAATACAAAATATAGGCACTTATCATGCTGTGTTAGATTTGGCTAATGCCTTCTTCAGCATCCCTTTACACCCTGACTCGCAGGACCAATTTGCTTTTACTTGGAATGGCCAACAATGGACATTCCAAGTGTTGCCCCAGGGNTATCTACANAGCCCCACTATTTGTCATGGAATGATTGCTAGAGATTTAACTTTATGTCCACTGCCACCTGCTGTTAAACAGTTTCATTACATTGATGATATTATGCTAACCTCTGAAGACTTGTCATTGCTACAGCAACACCTTGATGCATTGTGCACCCTTCTCCAATCCAGAGGATGGGCCATCAACCCGCAAAAGATACAAGGCCCAGGACCGGCTGTAAAGTTCCTAGGGGTCACTTGGTCGGGTAAGACACGCCTTATCCCAGGCATAGTCATTGACAAAATACAACAATTTTCCATGCCTAAAACAGTTAAACAGTTACAAAGTTTCCTAGGTCTTTTGGGATATTGGCGGGCTTTTATTCCACATTTAGCTCAATGTTTGCGTCCCCTATACCGACTAGTAAAGAAGGGATCTAGTTGGTGCTGGGATAAAGAACAAGAGGAAGCATTTGAGAAGGCTAAANTATTAGTGGCTCGGGCACAAGCCTTAGGTTCCCCCCTTCCCGGGNTACCGNTNTCTTTGGATGTGACCATAAGCCCTGAGGGGACCAGCTGGGCCCTCGGGCAAGTCCAGCATGGGAAAGCGGTTCCCCTAGGATTCTGGTCACANCTATGGAAGGGCGCTGAAACCCGCTATTCCCCGATTGAACAACGGGTCCTGGGGGTATANAAGGCCTTGCGGCAAGTTGAACCCGTAACTGCCGCTTTNCCGGTAACAGNGAAAACGGGTCTCCCTATNAAGGGCTGGANAGAAGGGTTGTTTNCCAGGCCTGNNTCAGCTATTGCCCAGGCCTCCACTTTACAAAANTGGCATGCANACCTGCAACAACGTAGCGCCCTCTCCACGAGTCCCTTGGGAGATGAACTGCATGCTNTCTTAGGGCCAGTACACTATGAGACCAGTGCTGCCCCTATTGTGGAGCCCCCACGGGGGATGCCTCCGATGNTACACGAAGGCACGGCCCCCATTCCTGAAAACGCTTGGTACTCGGATGGGTNNAGCCGAGGTAACCCTTGTGTATGGACGGCAGTAGCTGTACAACCGCAGACAGATACTATCTGGTTTGAGATGGGAATGCAGCAAAGCAGTCAATGGGCAGAACTCCGAGCTGCATGGTTGGTTTGTACCCATGAGCCATGGCCTATAGTTCTCTGTACAGATAGTTGGGCAGTATTTAAGGGTCTTACAACTTGGCTTGCCCAGTGGGCCCGGGATGACTGGCATGTACTTTAAAAACCCTTATGGGGAGCTGCCATGTGGAAAGACATTTGGGAAAGGCTACAAGAACCCACTGCGAGCCTAATTGTGTATCATGTTTCAGCACACTGGTCAGATTCACCTCCCGGTAACATGGAGGCTGATACCCTAGCAAAAATTAGAACACTGGCTCCCTCGCAATCNTCTGAGCTAGCTGATTGGGTACATAAACACAGTGGGCATCGCAGTGCACGAGTGGGCTGGCAAATAGCAAAGGGAGCAGGATTGCCCCTCCGCTATGCAGATTTAGCGGCGGCAGTAACAAACTGCTTAGTTTGCTCCCGCCTGCGCCCCCGCCGCATCCCACATACACCTGGACACATACATAAGACAGCCGCCCCTGTGAGAGACTGGCAGATAGACTACATCGGACCCCTGCCAGTAAGCTTGGGACAAAAGTATGCACTAACATGTGTAGACACTGCCACGGGATTGTTGCAGGCCTTCCCTTGCAAAAGGGCAAACCAAACAGCCACCATTAAGGGCTTGGAGCAACTCAGTGTCATGTATGGATACCCTCGATGCATTGATAGCGACCGAGGCACGCATTTCACTGGACATGATGTCCAAGATTGGGCACATGAAAAGGATATAGACCGGAGATTTCACTTGCCATATAATCCCCAAGCGGCAGGGTTGATTGAAAGGAAAAATGGCATTTTGAAGGCACAACTGCGAGCACTTTCACAATCCAATACCTTGCATGGGTGGGCGAAGGTTTTGCCTCAAGCCATTAGAAACCTTAATTCGGTTGAGACAAATACGGGGCTGGCACCATACCAATGACTCGGGACCACCGCAGAGGAGGGTCCATTAACCATAGTTGTAAAGAAAGTCCGACCAGACGCATTTCTACCGGAGCTGATAAAAGGCCAATGGCAAATGTTATTTGGGACTCCCCAAGACCTTGAGCCAGGGGAGGGGACACTTGAATGGGGGTTGGACTGGCAACTTCCCCCAGGTTGGATAGGGTATTTCTTGCCAGAGAGCGAGGAATTCCCCGGCCAACTAAAGTGGTCTCCGTTGATCCTGTTGGAGTCTGGGCCAAAACGCTCCACATACCAATACACTGGAACACGGCCCCTTTTAAAGGGCACTCTGGTCGGCCGTTTGACATGGTCCTTTGCTGCCCCTGTAACCTTNACAGATAATACCGGCACCTTCGCCCTTAGGCAACATGTTTGGTATGCACCCCCAGCCCATAATCCTTNGGCTGCCTATGTCCTAACTAACAGAGATGAAGCTACCACAGTCATTTTGCTTGATGGGGAAGAACTGCCCCGCCAAGTACCTACTAAACACTTGTATTTCCGCCCATAGTCTTCTGTTCCTGTTGCTGCTCTGCCCTACAAAAGCCTCTTGGTTTGGATCCTGGGGAACATGGTGGCAAAAGGCATTATTAATTCTGTGTCTTATACTTGGCATAGGTATCATTGCCTGTTGTTGTCTGTATTGTTGCTGCGGCCTCTGCTTACAAGTAGAAAACAAATTGATGCAACGTGTCACCCACGCCATGAAATGACTGCAGCACCCCTCNCCTCTAAAGGCTCAGGGACCATCGCGGAAGAGGNGGGCGCGTGAGATTGTAAGAGCCGGATTAGAGGGGTGGAG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERVL47 | Ebf2 | 3227 | 3235 | - | 16.79 | CCCAAGGGA |
| ERVL47 | TFAP2A | 2913 | 2925 | + | 16.72 | AGCCCTGAGGGGA |
| ERVL47 | KLF5 | 1559 | 1568 | - | 16.67 | GCCCCACCCC |
| ERVL47 | HLH4C | 294 | 307 | + | 16.61 | GTAGCAGCTGAGGC |
| ERVL47 | DOF5.8 | 1249 | 1267 | - | 16.61 | TTTTTCCCTTTTCCTTTAG |
| ERVL47 | TFAP2C | 2913 | 2925 | - | 16.60 | TCCCCTCAGGGCT |
| ERVL47 | EBF3 | 3227 | 3235 | - | 16.59 | CCCAAGGGA |
| ERVL47 | FAR1 | 5208 | 5216 | - | 16.59 | TCACGCGCC |
| ERVL47 | TFAP2C | 2913 | 2925 | + | 16.55 | AGCCCTGAGGGGA |
| ERVL47 | ARALYDRAFT_496250 | 4425 | 4432 | + | 16.55 | GGGACCAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
