ERVL
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000118 |
|---|---|
| TE superfamily | ERV3 |
| TE order | LTR |
| Species | Boreoeutheria |
| Length | 5757 |
| Kimura value | 20.00 |
| Tau index | 0.8293 |
| Description | Endogenous retrovirus, ERVL subfamily (internal region) |
| Comment | Internal sequence of endogenous retrovirus ancestral to HERVL. ERVL represents a subfamily active in a common ancestor of most or all primates, and possibly outside of primates. |
| Sequence |
AATTTTGGTACCAAGAGTGTCTAGAGGAACAGAATTTTAAGGATGGGTTTTCTGAATTGGTTTTGGGGNTTCNGGAATTGGCTNCCTAATNTGATTAGATTTAAAGACGCTAATGACTCTATTTCCAGTAGTAAAGAGAGCACTGATAGTCCATGGCATANCGNNNNATNNNACGNCGTGAACTGTTTATAGAGATATGCAAAATATCTGCATTGGATACTCCTAATCAACCACTTATAAGAGGCAAGGAGCTNAGTGACTCTATATATANTCGATACCTGAACATTTTTGGAAAACTAAGGAATATAATGANGTTGGTTGGTTGCTCCTAATGTCGCTGGACAAAGTGGCGAAAGAAAAGGATGAGCTCAGGGATTCGAATTCCCAGCTCAAGTAGCTNCATAAATGACCTGAAAGCTTCTATGTNTGCCCTGAANGAGANCCTTATCTCCTGTAGCCGCAGGGCTGAAATTGCTGAAAATCAAACGCAGAATCTCATCCTGCGANTGGCTGAATTACAACGCAAGTTGAACTCCCAGCCTCGCAAGGTGTCTACTGTTAAAGTGAGGGCATTGATTGGGAAAGAATGGGATCCTGNAAGTTGGAATGGGGACGTGTGGGAAGACCCTGATGAAGCTGGGGACATTGAGCCCCTAAATTCTGATGAGTCTTCTTTTGCCAGTGGAAGCGGCCTCCCCACCCCCAGCAGAAGTGGCCTCCCCACCCCCAGTGGCAGCGGCTTCCCCACCCACGGTGGTATCGGCCTTTCCACCTCGTCTGAGGGGATTAACCCTGCATTGCCTGAGGAAACGGTAATGGCCTCCCCTGAGGCAGTTGCCATGCAAGACAATGCTGATTCTCCTCAGGACCCACCCCCACCACCCCTCTTTGCTTCTAGACCTATAACTAGACTCAAGTCCCAGCAGGCCCCTAAAGGTGAGGTACAAAGTGTGACCCATGAGGAGGTGCGCTACACTCCAAAAGAACTACTTGAGTTTTCTAATTTATACAGGCAGAAATCTGGGGAACATGTATGGGAATGGATATTAAGGGTGTGGGATAATGGCGGAAGGAACATAAAGTTGGATCAGGCCGAATTTATTGATATGGGCTCACTAAGCAGAGATTCTGCATTTAATGTTGCAGCTCGGGGAGTTAGAAAGGGCTCTAACAGTTTGNTTGNTTGGTTGGCTGAAACATGGATCAAAAGATGGCCCACCGTGAGCGAGCTGGAAATGCCCGANCTCCCTTGGTTTAATGTAGAGGAAGGGATCCAAAGGCTTAGGGAGATTGGAATGTTGGAGTGGATTTGTCATTTAAGACCCACTCACCCACACTGGGAGGGTCCAGAAGACATNCCTTTCACCAANACTTTGAGAAATANATTTGTGAGGGGAGCNCCAGCATCCTTGAAGAGCTCTGTGATNGCTCTTCTCTGTAGGCCAGACCTTACAGTGGGAACCGCAGTCACTNAACTGGAAAACTTAAATGCAATGGGAATAATNGGATCCCGGGGTGGCAGGGGCCAAGTGGCGGCACTCAACCGCCAAAGGCAAGGTGGGCGTAGTTACCGTAATGGACAGCAGAGNCGAAGCGGCAATCAGAATAGTCTGACTCATGCAGACCTNTGGCANTGGCTAATTAATCATGGTGTTCCTAGAAGTGAAATAGATAGGAAGCCTACTAAATTCTTACTTGATCTGTATAAGCAGAAAACTTCTAGGTCNAGTGAACAAAAGTCTAACTCGAATCATAAAAACAGAGAGTCACGGCCCCTCAATCAATTCCCAGACTTGAGCCAGTTTACAGACCCAGAACCCCTTGAATGAAGGGGAGGCCGGGTCCCCTCGAGGAAGGACCCTGNTACACTACCGAAAATNTATACTGTNAATCTTTCTCCCAGCCTTCCCCAAAGGGACCTGCGGCCNTTTACCAGGGTAACTGTGCACTGGGGAAAGGGAAATANTCAGACCTTTCGGGGACTACTGGACACTGGCTCTGAACTGACACTGATTCCAGGAGACCCAAAACGTCACCGTGGCCCTCCAGTCAGAGTAGGGGCTTACGGAGGTCAGGTGATNAATGGAGTTTTAGCTCAGGTCCATCTCACAGTGGGTCCAGTGGGTCCCCGAACCCATCCTGCGGTTATTTCCCCAGTTCCAGAATGCATAATTGGAATAGACATACTTAGCAGCTGGCAGAATCCCCACATTGGTTCCCTGACCTGTGGAGTGAGGGCTATTATGGTGGGAAAGGCCAAGTGGAAGCCNCTAGAACTGCCTCTACCTAGGAAAATAGTAAATCAAAAGCAATACCGCATCCCTGGAGGAATTGCAGAGATTAGTGCCACCATCAAGGACTTGAAAGATGCAGGGGTGGTGATTCCCACCACATCCCCATTCAACTCNCCTATTTGGCCTGTGCAGAAGACAGATGGATCTTGGAGAATGACAGTGGATTATCGTAAGCTTAACCAAGTGGTGACTCCAATTGCAGCTGCTGTNCCAGATGTGGTTTCATTGCTTGAGCAAATTAACACATCCCCTGGTACCTGGTATGCAGCTATTGATCTGGCAAATGCCTTTTTCTCCATNCCTGTCCATAAGGCCCACCAGAAGCAGTTTGCTTTCAGCTGGCAAGGCCAGCAATATACCTTCACTGTCCTACCTCAGGGNTATATCAACTCTCCAGCCCTATGTCATAATTTAGTTCGCAGGGATCTTGATCGCCTTTCCCTTCCACAAGATATCACACTGGTCCATTACATTGATGACATTATGCTGATTGGACCTAGTGAGCAAGAAGTAGCAANTACTCTAGACTTATTGGTAAGACATTTGCGTGTCAGAGGGTGGGAAATAAATCCGACTAAAATTCAGGGGCCTTCTACCTCAGTGAAATTTCTAGGGGTCCAGTGGTGTGGGGCATGTCGAGATATCCCTTCTAAGGTGAAGGATAAGTTGTTGCATCTGGCCCCTCCTACAACCAAGAAAGAGGCACAACGCCTAGTGGGCCTNTTTGGATTTTGGAGGCAACATATTCCTCATTTGGGTGTGTTACTCCGGCCCATTTACCGAGTGACCCGAAAAGCTGCTAGTTTTGAGTGGGGCCCAGAACAGGAGAAGGCTCTGCAACAGGTCCAGGCTGCTGTGCAAGCTGCTCTGCCACTTGGGCCATATGATCCAGCAGATCCAATGGTGCTTGAAGTGTCAGTGGCAGATAGGGATGCTGTTTGGAGCCTTTGGCAGGCCCCTATAGGTGAATCGCAGCGCAGGCCTTTAGGATTTTGGAGCAAGGCCCTGCCATCNTCCGCAGATAACTACTCTCCTTTTGAGAGACAGCTCTTGGCCTGCTACTGGGCCTTAGTAGAGACTGAACGCTTGACCATGGGCCACCAAGTTACCATGCGACCTGAGCTGCCCATCATGAACTGGGTGTTATCTGACCCACCAAGCCATAAAGTTGGGCATGCACAGCAGCACTCCATCATCAAATGGAAGTGGTATATACGTGATCGGGCCCGAGCAGGCCCTGAAGGCACAAGTAAGTTACATGAAGAAGTGGCCCAAATGCCCATGGTCCCCACTCCTGCTACACTGCCTTCTCTCTCCCAGCCTGCACCTATGGCCTCATGGGGAGTTTCCCTACGATCAGTTGACAGAGGAAGAGAAGACTCGGGCCTGGTTTACAGATGGTTCTGCACGATATGCAGGCACCACCCGAAAGTGGACAGCTGCAGCACTACAGCCCCTTTCTGGGACATCCCTGAAGGACAGTGGTGAAGGGAAATCCTCCCAGTGGGCAGAACTTCGAGCAGTGCACCTGGTTGTGCACTTTGCTTGGAAGGAGAAATGGCCAGACGTGCGATTATATACCGATTCATGGGCTGTAGCCAATGGTTTGGCTGGATGGTCAGGGACTTGGAAGGAACATGATTGGAAAATTGGTGACAAAGAAATTTGGGGAAGAGGTATGTGGATAGACCTCTCTGAATGGGCAAAAAACGTGAAGATATTTGTGTCCCATGTGAATGCTCACCAAAGGGTGACCTCAGCAGAGGAGGATTTTAATAATCAAGTGGATAGGATGACCCGTTCTGTGGATACCAGTCAGCCTCTTTCCCCAGCCACCCTGTCATTGCCCAATGGGCTCATGAACAAAGTGGCCATGGTGGCAGGGATGGAGGTTATGCATGGGCTCAGCAACATGGACTTCCACTCACCAAGGCCGACCTGGCTACGGCCACCGCTGAGTGCCCAATCTGCCAGCAGCAGAGACCAACACTGAGCCCCCGATATGGCACCATTCCCCGGGGTGATCAGCCAGCTACCTGGTGGCAGGTTGATTACATTGGACCNCTTCCATCATGGAAGGGGCAGCGTTTTGTCCTTACTGGAATAGACACTTACTCTGGATACGGATTTGCCTTCCCTGCACGCAATGCTTCTGCCAAAACTACCATCCGTGGACTTACAGAATGCCTTATCCACCATCATGGTATTCCACACAGCATTGCTTCTGACCAAGGAACTCACTTCACAGCAAAAGAAGTGCGGCAATGGGCTCATGCTCATGGAATTCACTGGTCTTACCATGTTCCCCACCATCCTGAAGCAGCTGGCTTGATAGAACGGTGGAATGGCCTTTTGAAGACTCAGTTACAGCGCCAGCTAGGTGGCAATACCTTGCAGGGCTGGGGCAAGGTTCTCCAGAAGGCTGTATATGCTCTGAATCAGCGTCCAATATATGGTGCTGTTTCTCCCATAGCCAGGATTCACGGGTCCAGGAATCAAGGGGTGGAAATGGGAGTGGCACCACTCACTATTACCCCTAGTGACCCACTAGCAAAATTTTTGCTTCCTGTTCCCGCGACTTTATGCTCTGCTGGCCTAGAGGTCTTAGTTCCAGAGGGAGGAATGCTTCCACCAGGAGACACAACAATGATTCCATTGAACTGGAAGTTAAGACTGCCACCCGGCCACTTTGGGCTCCTCATGCCTCTGAGTCAACAGGCAAAGAAGGGAGTTACGGTGTTGGCTGGGGTGATTGATCCNGACTACCAAGGGGAAATTGGACTACTACTCCACAATGGAGGTAAGGAAGAGTATGTCTGGAATACAGGAGATCCCTTAGGGCGTCTCTTAGTATTACCATGCCCTGTGATTAAGGTCAATGGAAAACTACAACAACCCAATCCAGGCAGGACTACNAATGGCCCAGACCCTTCAGGAATGAAGGTTTGGGTCACCCCGCCAGGTAAAGAACCATGACCAGCTGAGGTGCTTGCTGAAGGCAAAGGGAATACAGAATGGGTAGTAGAAGAAGGTAGTTATAAATACCAGCTACGACCACGTGACCAGTTACAGAAACGAGGACTGTAATTGTCATGAGTATTTCCTCCTTATTTTGTTATGAATATGTTTGTGTGTATATATACATATATTAAGCAAATATCTTTGTTTTCTTTCCTCTCTTATTCCCTTATCATGTAACATAAGATGTATTGACTTTATATCAGTATTTAAGTATTGTTAATTTTACATCATAGTATTTAAGTTACGGGATATCAAGGAGAAGAGTAAACATCACTCAAGGACTTTACCTCCTCTTCTGGGGAAGGGGTTAGTGCGTTTTCGGTTGTACGCAGGATAGTTGTATCATGTTAGGTGGAATTATGACCTTGTTATTGTCTTTATTTGGAGATTAAGTATGGTTTAAGGAGATGCGTATGGGTGCCAAGTTGACAAGGGGTGGACT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERVL | TFEC | 5350 | 5357 | + | 15.88 | CACGTGAC |
| ERVL | LHY | 201 | 209 | - | 15.86 | AGATATTTT |
| ERVL | PK19717.1 | 3104 | 3112 | - | 15.77 | GGGCCCCAC |
| ERVL | SREBF1 | 2071 | 2080 | - | 15.63 | ATCACCTGAC |
| ERVL | cassava45561.m1 | 3104 | 3112 | - | 15.61 | GGGCCCCAC |
| ERVL | RVE1 | 201 | 209 | + | 15.59 | AAAATATCT |
| ERVL | SREBF2 | 5038 | 5047 | + | 15.54 | CTGGGGTGAT |
| ERVL | VIP1 | 2629 | 2638 | - | 15.51 | TGCCAGCTGA |
| ERVL | KLF4 | 695 | 702 | + | 15.48 | CCCCACCC |
| ERVL | KLF4 | 719 | 726 | + | 15.48 | CCCCACCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
