ERVL
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000118 |
|---|---|
| TE superfamily | ERV3 |
| TE class | LTR |
| Species | Boreoeutheria |
| Length | 5757 |
| Kimura value | 20.00 |
| Tau index | 0.8293 |
| Description | Endogenous retrovirus, ERVL subfamily (internal region) |
| Comment | Internal sequence of endogenous retrovirus ancestral to HERVL. ERVL represents a subfamily active in a common ancestor of most or all primates, and possibly outside of primates. |
| Sequence |
AATTTTGGTACCAAGAGTGTCTAGAGGAACAGAATTTTAAGGATGGGTTTTCTGAATTGGTTTTGGGGNTTCNGGAATTGGCTNCCTAATNTGATTAGATTTAAAGACGCTAATGACTCTATTTCCAGTAGTAAAGAGAGCACTGATAGTCCATGGCATANCGNNNNATNNNACGNCGTGAACTGTTTATAGAGATATGCAAAATATCTGCATTGGATACTCCTAATCAACCACTTATAAGAGGCAAGGAGCTNAGTGACTCTATATATANTCGATACCTGAACATTTTTGGAAAACTAAGGAATATAATGANGTTGGTTGGTTGCTCCTAATGTCGCTGGACAAAGTGGCGAAAGAAAAGGATGAGCTCAGGGATTCGAATTCCCAGCTCAAGTAGCTNCATAAATGACCTGAAAGCTTCTATGTNTGCCCTGAANGAGANCCTTATCTCCTGTAGCCGCAGGGCTGAAATTGCTGAAAATCAAACGCAGAATCTCATCCTGCGANTGGCTGAATTACAACGCAAGTTGAACTCCCAGCCTCGCAAGGTGTCTACTGTTAAAGTGAGGGCATTGATTGGGAAAGAATGGGATCCTGNAAGTTGGAATGGGGACGTGTGGGAAGACCCTGATGAAGCTGGGGACATTGAGCCCCTAAATTCTGATGAGTCTTCTTTTGCCAGTGGAAGCGGCCTCCCCACCCCCAGCAGAAGTGGCCTCCCCACCCCCAGTGGCAGCGGCTTCCCCACCCACGGTGGTATCGGCCTTTCCACCTCGTCTGAGGGGATTAACCCTGCATTGCCTGAGGAAACGGTAATGGCCTCCCCTGAGGCAGTTGCCATGCAAGACAATGCTGATTCTCCTCAGGACCCACCCCCACCACCCCTCTTTGCTTCTAGACCTATAACTAGACTCAAGTCCCAGCAGGCCCCTAAAGGTGAGGTACAAAGTGTGACCCATGAGGAGGTGCGCTACACTCCAAAAGAACTACTTGAGTTTTCTAATTTATACAGGCAGAAATCTGGGGAACATGTATGGGAATGGATATTAAGGGTGTGGGATAATGGCGGAAGGAACATAAAGTTGGATCAGGCCGAATTTATTGATATGGGCTCACTAAGCAGAGATTCTGCATTTAATGTTGCAGCTCGGGGAGTTAGAAAGGGCTCTAACAGTTTGNTTGNTTGGTTGGCTGAAACATGGATCAAAAGATGGCCCACCGTGAGCGAGCTGGAAATGCCCGANCTCCCTTGGTTTAATGTAGAGGAAGGGATCCAAAGGCTTAGGGAGATTGGAATGTTGGAGTGGATTTGTCATTTAAGACCCACTCACCCACACTGGGAGGGTCCAGAAGACATNCCTTTCACCAANACTTTGAGAAATANATTTGTGAGGGGAGCNCCAGCATCCTTGAAGAGCTCTGTGATNGCTCTTCTCTGTAGGCCAGACCTTACAGTGGGAACCGCAGTCACTNAACTGGAAAACTTAAATGCAATGGGAATAATNGGATCCCGGGGTGGCAGGGGCCAAGTGGCGGCACTCAACCGCCAAAGGCAAGGTGGGCGTAGTTACCGTAATGGACAGCAGAGNCGAAGCGGCAATCAGAATAGTCTGACTCATGCAGACCTNTGGCANTGGCTAATTAATCATGGTGTTCCTAGAAGTGAAATAGATAGGAAGCCTACTAAATTCTTACTTGATCTGTATAAGCAGAAAACTTCTAGGTCNAGTGAACAAAAGTCTAACTCGAATCATAAAAACAGAGAGTCACGGCCCCTCAATCAATTCCCAGACTTGAGCCAGTTTACAGACCCAGAACCCCTTGAATGAAGGGGAGGCCGGGTCCCCTCGAGGAAGGACCCTGNTACACTACCGAAAATNTATACTGTNAATCTTTCTCCCAGCCTTCCCCAAAGGGACCTGCGGCCNTTTACCAGGGTAACTGTGCACTGGGGAAAGGGAAATANTCAGACCTTTCGGGGACTACTGGACACTGGCTCTGAACTGACACTGATTCCAGGAGACCCAAAACGTCACCGTGGCCCTCCAGTCAGAGTAGGGGCTTACGGAGGTCAGGTGATNAATGGAGTTTTAGCTCAGGTCCATCTCACAGTGGGTCCAGTGGGTCCCCGAACCCATCCTGCGGTTATTTCCCCAGTTCCAGAATGCATAATTGGAATAGACATACTTAGCAGCTGGCAGAATCCCCACATTGGTTCCCTGACCTGTGGAGTGAGGGCTATTATGGTGGGAAAGGCCAAGTGGAAGCCNCTAGAACTGCCTCTACCTAGGAAAATAGTAAATCAAAAGCAATACCGCATCCCTGGAGGAATTGCAGAGATTAGTGCCACCATCAAGGACTTGAAAGATGCAGGGGTGGTGATTCCCACCACATCCCCATTCAACTCNCCTATTTGGCCTGTGCAGAAGACAGATGGATCTTGGAGAATGACAGTGGATTATCGTAAGCTTAACCAAGTGGTGACTCCAATTGCAGCTGCTGTNCCAGATGTGGTTTCATTGCTTGAGCAAATTAACACATCCCCTGGTACCTGGTATGCAGCTATTGATCTGGCAAATGCCTTTTTCTCCATNCCTGTCCATAAGGCCCACCAGAAGCAGTTTGCTTTCAGCTGGCAAGGCCAGCAATATACCTTCACTGTCCTACCTCAGGGNTATATCAACTCTCCAGCCCTATGTCATAATTTAGTTCGCAGGGATCTTGATCGCCTTTCCCTTCCACAAGATATCACACTGGTCCATTACATTGATGACATTATGCTGATTGGACCTAGTGAGCAAGAAGTAGCAANTACTCTAGACTTATTGGTAAGACATTTGCGTGTCAGAGGGTGGGAAATAAATCCGACTAAAATTCAGGGGCCTTCTACCTCAGTGAAATTTCTAGGGGTCCAGTGGTGTGGGGCATGTCGAGATATCCCTTCTAAGGTGAAGGATAAGTTGTTGCATCTGGCCCCTCCTACAACCAAGAAAGAGGCACAACGCCTAGTGGGCCTNTTTGGATTTTGGAGGCAACATATTCCTCATTTGGGTGTGTTACTCCGGCCCATTTACCGAGTGACCCGAAAAGCTGCTAGTTTTGAGTGGGGCCCAGAACAGGAGAAGGCTCTGCAACAGGTCCAGGCTGCTGTGCAAGCTGCTCTGCCACTTGGGCCATATGATCCAGCAGATCCAATGGTGCTTGAAGTGTCAGTGGCAGATAGGGATGCTGTTTGGAGCCTTTGGCAGGCCCCTATAGGTGAATCGCAGCGCAGGCCTTTAGGATTTTGGAGCAAGGCCCTGCCATCNTCCGCAGATAACTACTCTCCTTTTGAGAGACAGCTCTTGGCCTGCTACTGGGCCTTAGTAGAGACTGAACGCTTGACCATGGGCCACCAAGTTACCATGCGACCTGAGCTGCCCATCATGAACTGGGTGTTATCTGACCCACCAAGCCATAAAGTTGGGCATGCACAGCAGCACTCCATCATCAAATGGAAGTGGTATATACGTGATCGGGCCCGAGCAGGCCCTGAAGGCACAAGTAAGTTACATGAAGAAGTGGCCCAAATGCCCATGGTCCCCACTCCTGCTACACTGCCTTCTCTCTCCCAGCCTGCACCTATGGCCTCATGGGGAGTTTCCCTACGATCAGTTGACAGAGGAAGAGAAGACTCGGGCCTGGTTTACAGATGGTTCTGCACGATATGCAGGCACCACCCGAAAGTGGACAGCTGCAGCACTACAGCCCCTTTCTGGGACATCCCTGAAGGACAGTGGTGAAGGGAAATCCTCCCAGTGGGCAGAACTTCGAGCAGTGCACCTGGTTGTGCACTTTGCTTGGAAGGAGAAATGGCCAGACGTGCGATTATATACCGATTCATGGGCTGTAGCCAATGGTTTGGCTGGATGGTCAGGGACTTGGAAGGAACATGATTGGAAAATTGGTGACAAAGAAATTTGGGGAAGAGGTATGTGGATAGACCTCTCTGAATGGGCAAAAAACGTGAAGATATTTGTGTCCCATGTGAATGCTCACCAAAGGGTGACCTCAGCAGAGGAGGATTTTAATAATCAAGTGGATAGGATGACCCGTTCTGTGGATACCAGTCAGCCTCTTTCCCCAGCCACCCTGTCATTGCCCAATGGGCTCATGAACAAAGTGGCCATGGTGGCAGGGATGGAGGTTATGCATGGGCTCAGCAACATGGACTTCCACTCACCAAGGCCGACCTGGCTACGGCCACCGCTGAGTGCCCAATCTGCCAGCAGCAGAGACCAACACTGAGCCCCCGATATGGCACCATTCCCCGGGGTGATCAGCCAGCTACCTGGTGGCAGGTTGATTACATTGGACCNCTTCCATCATGGAAGGGGCAGCGTTTTGTCCTTACTGGAATAGACACTTACTCTGGATACGGATTTGCCTTCCCTGCACGCAATGCTTCTGCCAAAACTACCATCCGTGGACTTACAGAATGCCTTATCCACCATCATGGTATTCCACACAGCATTGCTTCTGACCAAGGAACTCACTTCACAGCAAAAGAAGTGCGGCAATGGGCTCATGCTCATGGAATTCACTGGTCTTACCATGTTCCCCACCATCCTGAAGCAGCTGGCTTGATAGAACGGTGGAATGGCCTTTTGAAGACTCAGTTACAGCGCCAGCTAGGTGGCAATACCTTGCAGGGCTGGGGCAAGGTTCTCCAGAAGGCTGTATATGCTCTGAATCAGCGTCCAATATATGGTGCTGTTTCTCCCATAGCCAGGATTCACGGGTCCAGGAATCAAGGGGTGGAAATGGGAGTGGCACCACTCACTATTACCCCTAGTGACCCACTAGCAAAATTTTTGCTTCCTGTTCCCGCGACTTTATGCTCTGCTGGCCTAGAGGTCTTAGTTCCAGAGGGAGGAATGCTTCCACCAGGAGACACAACAATGATTCCATTGAACTGGAAGTTAAGACTGCCACCCGGCCACTTTGGGCTCCTCATGCCTCTGAGTCAACAGGCAAAGAAGGGAGTTACGGTGTTGGCTGGGGTGATTGATCCNGACTACCAAGGGGAAATTGGACTACTACTCCACAATGGAGGTAAGGAAGAGTATGTCTGGAATACAGGAGATCCCTTAGGGCGTCTCTTAGTATTACCATGCCCTGTGATTAAGGTCAATGGAAAACTACAACAACCCAATCCAGGCAGGACTACNAATGGCCCAGACCCTTCAGGAATGAAGGTTTGGGTCACCCCGCCAGGTAAAGAACCATGACCAGCTGAGGTGCTTGCTGAAGGCAAAGGGAATACAGAATGGGTAGTAGAAGAAGGTAGTTATAAATACCAGCTACGACCACGTGACCAGTTACAGAAACGAGGACTGTAATTGTCATGAGTATTTCCTCCTTATTTTGTTATGAATATGTTTGTGTGTATATATACATATATTAAGCAAATATCTTTGTTTTCTTTCCTCTCTTATTCCCTTATCATGTAACATAAGATGTATTGACTTTATATCAGTATTTAAGTATTGTTAATTTTACATCATAGTATTTAAGTTACGGGATATCAAGGAGAAGAGTAAACATCACTCAAGGACTTTACCTCCTCTTCTGGGGAAGGGGTTAGTGCGTTTTCGGTTGTACGCAGGATAGTTGTATCATGTTAGGTGGAATTATGACCTTGTTATTGTCTTTATTTGGAGATTAAGTATGGTTTAAGGAGATGCGTATGGGTGCCAAGTTGACAAGGGGTGGACT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERVL | ZNF816 | 608 | 622 | + | 16.25 | TGGGGACGTGTGGGA |
| ERVL | RVE6 | 201 | 209 | - | 16.23 | AGATATTTT |
| ERVL | RVE5 | 201 | 209 | - | 16.21 | AGATATTTT |
| ERVL | ZNF331 | 4195 | 4204 | - | 16.18 | TGCTGAGCCC |
| ERVL | RVE8 | 201 | 209 | - | 16.08 | AGATATTTT |
| ERVL | ZNF331 | 3124 | 3133 | - | 16.05 | TGCAGAGCCT |
| ERVL | ZNF75D | 2247 | 2258 | + | 16.03 | GTGGGAAAGGCC |
| ERVL | REF6 | 1756 | 1764 | + | 15.93 | AAAACAGAG |
| ERVL | ARF39 | 1023 | 1033 | + | 15.89 | GGGGAACATGT |
| ERVL | klu | 870 | 880 | + | 15.89 | CCACCCCCACC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
