ERVL
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000118 |
|---|---|
| TE superfamily | ERV3 |
| TE class | LTR |
| Species | Boreoeutheria |
| Length | 5757 |
| Kimura value | 20.00 |
| Tau index | 0.8293 |
| Description | Endogenous retrovirus, ERVL subfamily (internal region) |
| Comment | Internal sequence of endogenous retrovirus ancestral to HERVL. ERVL represents a subfamily active in a common ancestor of most or all primates, and possibly outside of primates. |
| Sequence |
AATTTTGGTACCAAGAGTGTCTAGAGGAACAGAATTTTAAGGATGGGTTTTCTGAATTGGTTTTGGGGNTTCNGGAATTGGCTNCCTAATNTGATTAGATTTAAAGACGCTAATGACTCTATTTCCAGTAGTAAAGAGAGCACTGATAGTCCATGGCATANCGNNNNATNNNACGNCGTGAACTGTTTATAGAGATATGCAAAATATCTGCATTGGATACTCCTAATCAACCACTTATAAGAGGCAAGGAGCTNAGTGACTCTATATATANTCGATACCTGAACATTTTTGGAAAACTAAGGAATATAATGANGTTGGTTGGTTGCTCCTAATGTCGCTGGACAAAGTGGCGAAAGAAAAGGATGAGCTCAGGGATTCGAATTCCCAGCTCAAGTAGCTNCATAAATGACCTGAAAGCTTCTATGTNTGCCCTGAANGAGANCCTTATCTCCTGTAGCCGCAGGGCTGAAATTGCTGAAAATCAAACGCAGAATCTCATCCTGCGANTGGCTGAATTACAACGCAAGTTGAACTCCCAGCCTCGCAAGGTGTCTACTGTTAAAGTGAGGGCATTGATTGGGAAAGAATGGGATCCTGNAAGTTGGAATGGGGACGTGTGGGAAGACCCTGATGAAGCTGGGGACATTGAGCCCCTAAATTCTGATGAGTCTTCTTTTGCCAGTGGAAGCGGCCTCCCCACCCCCAGCAGAAGTGGCCTCCCCACCCCCAGTGGCAGCGGCTTCCCCACCCACGGTGGTATCGGCCTTTCCACCTCGTCTGAGGGGATTAACCCTGCATTGCCTGAGGAAACGGTAATGGCCTCCCCTGAGGCAGTTGCCATGCAAGACAATGCTGATTCTCCTCAGGACCCACCCCCACCACCCCTCTTTGCTTCTAGACCTATAACTAGACTCAAGTCCCAGCAGGCCCCTAAAGGTGAGGTACAAAGTGTGACCCATGAGGAGGTGCGCTACACTCCAAAAGAACTACTTGAGTTTTCTAATTTATACAGGCAGAAATCTGGGGAACATGTATGGGAATGGATATTAAGGGTGTGGGATAATGGCGGAAGGAACATAAAGTTGGATCAGGCCGAATTTATTGATATGGGCTCACTAAGCAGAGATTCTGCATTTAATGTTGCAGCTCGGGGAGTTAGAAAGGGCTCTAACAGTTTGNTTGNTTGGTTGGCTGAAACATGGATCAAAAGATGGCCCACCGTGAGCGAGCTGGAAATGCCCGANCTCCCTTGGTTTAATGTAGAGGAAGGGATCCAAAGGCTTAGGGAGATTGGAATGTTGGAGTGGATTTGTCATTTAAGACCCACTCACCCACACTGGGAGGGTCCAGAAGACATNCCTTTCACCAANACTTTGAGAAATANATTTGTGAGGGGAGCNCCAGCATCCTTGAAGAGCTCTGTGATNGCTCTTCTCTGTAGGCCAGACCTTACAGTGGGAACCGCAGTCACTNAACTGGAAAACTTAAATGCAATGGGAATAATNGGATCCCGGGGTGGCAGGGGCCAAGTGGCGGCACTCAACCGCCAAAGGCAAGGTGGGCGTAGTTACCGTAATGGACAGCAGAGNCGAAGCGGCAATCAGAATAGTCTGACTCATGCAGACCTNTGGCANTGGCTAATTAATCATGGTGTTCCTAGAAGTGAAATAGATAGGAAGCCTACTAAATTCTTACTTGATCTGTATAAGCAGAAAACTTCTAGGTCNAGTGAACAAAAGTCTAACTCGAATCATAAAAACAGAGAGTCACGGCCCCTCAATCAATTCCCAGACTTGAGCCAGTTTACAGACCCAGAACCCCTTGAATGAAGGGGAGGCCGGGTCCCCTCGAGGAAGGACCCTGNTACACTACCGAAAATNTATACTGTNAATCTTTCTCCCAGCCTTCCCCAAAGGGACCTGCGGCCNTTTACCAGGGTAACTGTGCACTGGGGAAAGGGAAATANTCAGACCTTTCGGGGACTACTGGACACTGGCTCTGAACTGACACTGATTCCAGGAGACCCAAAACGTCACCGTGGCCCTCCAGTCAGAGTAGGGGCTTACGGAGGTCAGGTGATNAATGGAGTTTTAGCTCAGGTCCATCTCACAGTGGGTCCAGTGGGTCCCCGAACCCATCCTGCGGTTATTTCCCCAGTTCCAGAATGCATAATTGGAATAGACATACTTAGCAGCTGGCAGAATCCCCACATTGGTTCCCTGACCTGTGGAGTGAGGGCTATTATGGTGGGAAAGGCCAAGTGGAAGCCNCTAGAACTGCCTCTACCTAGGAAAATAGTAAATCAAAAGCAATACCGCATCCCTGGAGGAATTGCAGAGATTAGTGCCACCATCAAGGACTTGAAAGATGCAGGGGTGGTGATTCCCACCACATCCCCATTCAACTCNCCTATTTGGCCTGTGCAGAAGACAGATGGATCTTGGAGAATGACAGTGGATTATCGTAAGCTTAACCAAGTGGTGACTCCAATTGCAGCTGCTGTNCCAGATGTGGTTTCATTGCTTGAGCAAATTAACACATCCCCTGGTACCTGGTATGCAGCTATTGATCTGGCAAATGCCTTTTTCTCCATNCCTGTCCATAAGGCCCACCAGAAGCAGTTTGCTTTCAGCTGGCAAGGCCAGCAATATACCTTCACTGTCCTACCTCAGGGNTATATCAACTCTCCAGCCCTATGTCATAATTTAGTTCGCAGGGATCTTGATCGCCTTTCCCTTCCACAAGATATCACACTGGTCCATTACATTGATGACATTATGCTGATTGGACCTAGTGAGCAAGAAGTAGCAANTACTCTAGACTTATTGGTAAGACATTTGCGTGTCAGAGGGTGGGAAATAAATCCGACTAAAATTCAGGGGCCTTCTACCTCAGTGAAATTTCTAGGGGTCCAGTGGTGTGGGGCATGTCGAGATATCCCTTCTAAGGTGAAGGATAAGTTGTTGCATCTGGCCCCTCCTACAACCAAGAAAGAGGCACAACGCCTAGTGGGCCTNTTTGGATTTTGGAGGCAACATATTCCTCATTTGGGTGTGTTACTCCGGCCCATTTACCGAGTGACCCGAAAAGCTGCTAGTTTTGAGTGGGGCCCAGAACAGGAGAAGGCTCTGCAACAGGTCCAGGCTGCTGTGCAAGCTGCTCTGCCACTTGGGCCATATGATCCAGCAGATCCAATGGTGCTTGAAGTGTCAGTGGCAGATAGGGATGCTGTTTGGAGCCTTTGGCAGGCCCCTATAGGTGAATCGCAGCGCAGGCCTTTAGGATTTTGGAGCAAGGCCCTGCCATCNTCCGCAGATAACTACTCTCCTTTTGAGAGACAGCTCTTGGCCTGCTACTGGGCCTTAGTAGAGACTGAACGCTTGACCATGGGCCACCAAGTTACCATGCGACCTGAGCTGCCCATCATGAACTGGGTGTTATCTGACCCACCAAGCCATAAAGTTGGGCATGCACAGCAGCACTCCATCATCAAATGGAAGTGGTATATACGTGATCGGGCCCGAGCAGGCCCTGAAGGCACAAGTAAGTTACATGAAGAAGTGGCCCAAATGCCCATGGTCCCCACTCCTGCTACACTGCCTTCTCTCTCCCAGCCTGCACCTATGGCCTCATGGGGAGTTTCCCTACGATCAGTTGACAGAGGAAGAGAAGACTCGGGCCTGGTTTACAGATGGTTCTGCACGATATGCAGGCACCACCCGAAAGTGGACAGCTGCAGCACTACAGCCCCTTTCTGGGACATCCCTGAAGGACAGTGGTGAAGGGAAATCCTCCCAGTGGGCAGAACTTCGAGCAGTGCACCTGGTTGTGCACTTTGCTTGGAAGGAGAAATGGCCAGACGTGCGATTATATACCGATTCATGGGCTGTAGCCAATGGTTTGGCTGGATGGTCAGGGACTTGGAAGGAACATGATTGGAAAATTGGTGACAAAGAAATTTGGGGAAGAGGTATGTGGATAGACCTCTCTGAATGGGCAAAAAACGTGAAGATATTTGTGTCCCATGTGAATGCTCACCAAAGGGTGACCTCAGCAGAGGAGGATTTTAATAATCAAGTGGATAGGATGACCCGTTCTGTGGATACCAGTCAGCCTCTTTCCCCAGCCACCCTGTCATTGCCCAATGGGCTCATGAACAAAGTGGCCATGGTGGCAGGGATGGAGGTTATGCATGGGCTCAGCAACATGGACTTCCACTCACCAAGGCCGACCTGGCTACGGCCACCGCTGAGTGCCCAATCTGCCAGCAGCAGAGACCAACACTGAGCCCCCGATATGGCACCATTCCCCGGGGTGATCAGCCAGCTACCTGGTGGCAGGTTGATTACATTGGACCNCTTCCATCATGGAAGGGGCAGCGTTTTGTCCTTACTGGAATAGACACTTACTCTGGATACGGATTTGCCTTCCCTGCACGCAATGCTTCTGCCAAAACTACCATCCGTGGACTTACAGAATGCCTTATCCACCATCATGGTATTCCACACAGCATTGCTTCTGACCAAGGAACTCACTTCACAGCAAAAGAAGTGCGGCAATGGGCTCATGCTCATGGAATTCACTGGTCTTACCATGTTCCCCACCATCCTGAAGCAGCTGGCTTGATAGAACGGTGGAATGGCCTTTTGAAGACTCAGTTACAGCGCCAGCTAGGTGGCAATACCTTGCAGGGCTGGGGCAAGGTTCTCCAGAAGGCTGTATATGCTCTGAATCAGCGTCCAATATATGGTGCTGTTTCTCCCATAGCCAGGATTCACGGGTCCAGGAATCAAGGGGTGGAAATGGGAGTGGCACCACTCACTATTACCCCTAGTGACCCACTAGCAAAATTTTTGCTTCCTGTTCCCGCGACTTTATGCTCTGCTGGCCTAGAGGTCTTAGTTCCAGAGGGAGGAATGCTTCCACCAGGAGACACAACAATGATTCCATTGAACTGGAAGTTAAGACTGCCACCCGGCCACTTTGGGCTCCTCATGCCTCTGAGTCAACAGGCAAAGAAGGGAGTTACGGTGTTGGCTGGGGTGATTGATCCNGACTACCAAGGGGAAATTGGACTACTACTCCACAATGGAGGTAAGGAAGAGTATGTCTGGAATACAGGAGATCCCTTAGGGCGTCTCTTAGTATTACCATGCCCTGTGATTAAGGTCAATGGAAAACTACAACAACCCAATCCAGGCAGGACTACNAATGGCCCAGACCCTTCAGGAATGAAGGTTTGGGTCACCCCGCCAGGTAAAGAACCATGACCAGCTGAGGTGCTTGCTGAAGGCAAAGGGAATACAGAATGGGTAGTAGAAGAAGGTAGTTATAAATACCAGCTACGACCACGTGACCAGTTACAGAAACGAGGACTGTAATTGTCATGAGTATTTCCTCCTTATTTTGTTATGAATATGTTTGTGTGTATATATACATATATTAAGCAAATATCTTTGTTTTCTTTCCTCTCTTATTCCCTTATCATGTAACATAAGATGTATTGACTTTATATCAGTATTTAAGTATTGTTAATTTTACATCATAGTATTTAAGTTACGGGATATCAAGGAGAAGAGTAAACATCACTCAAGGACTTTACCTCCTCTTCTGGGGAAGGGGTTAGTGCGTTTTCGGTTGTACGCAGGATAGTTGTATCATGTTAGGTGGAATTATGACCTTGTTATTGTCTTTATTTGGAGATTAAGTATGGTTTAAGGAGATGCGTATGGGTGCCAAGTTGACAAGGGGTGGACT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERVL | DAL81 | 2132 | 2150 | - | -39.42 | AATAACCGCAGGATGGGTT |
| ERVL | DAL81 | 3668 | 3686 | + | -39.42 | AGAAGACTCGGGCCTGGTT |
| ERVL | BPC5 | 5453 | 5482 | - | -40.01 | AGGGAATAAGAGAGGAAAGAAAACAAAGAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
