ERVL
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000118 |
|---|---|
| TE superfamily | ERV3 |
| TE class | LTR |
| Species | Boreoeutheria |
| Length | 5757 |
| Kimura value | 20.00 |
| Tau index | 0.8293 |
| Description | Endogenous retrovirus, ERVL subfamily (internal region) |
| Comment | Internal sequence of endogenous retrovirus ancestral to HERVL. ERVL represents a subfamily active in a common ancestor of most or all primates, and possibly outside of primates. |
| Sequence |
AATTTTGGTACCAAGAGTGTCTAGAGGAACAGAATTTTAAGGATGGGTTTTCTGAATTGGTTTTGGGGNTTCNGGAATTGGCTNCCTAATNTGATTAGATTTAAAGACGCTAATGACTCTATTTCCAGTAGTAAAGAGAGCACTGATAGTCCATGGCATANCGNNNNATNNNACGNCGTGAACTGTTTATAGAGATATGCAAAATATCTGCATTGGATACTCCTAATCAACCACTTATAAGAGGCAAGGAGCTNAGTGACTCTATATATANTCGATACCTGAACATTTTTGGAAAACTAAGGAATATAATGANGTTGGTTGGTTGCTCCTAATGTCGCTGGACAAAGTGGCGAAAGAAAAGGATGAGCTCAGGGATTCGAATTCCCAGCTCAAGTAGCTNCATAAATGACCTGAAAGCTTCTATGTNTGCCCTGAANGAGANCCTTATCTCCTGTAGCCGCAGGGCTGAAATTGCTGAAAATCAAACGCAGAATCTCATCCTGCGANTGGCTGAATTACAACGCAAGTTGAACTCCCAGCCTCGCAAGGTGTCTACTGTTAAAGTGAGGGCATTGATTGGGAAAGAATGGGATCCTGNAAGTTGGAATGGGGACGTGTGGGAAGACCCTGATGAAGCTGGGGACATTGAGCCCCTAAATTCTGATGAGTCTTCTTTTGCCAGTGGAAGCGGCCTCCCCACCCCCAGCAGAAGTGGCCTCCCCACCCCCAGTGGCAGCGGCTTCCCCACCCACGGTGGTATCGGCCTTTCCACCTCGTCTGAGGGGATTAACCCTGCATTGCCTGAGGAAACGGTAATGGCCTCCCCTGAGGCAGTTGCCATGCAAGACAATGCTGATTCTCCTCAGGACCCACCCCCACCACCCCTCTTTGCTTCTAGACCTATAACTAGACTCAAGTCCCAGCAGGCCCCTAAAGGTGAGGTACAAAGTGTGACCCATGAGGAGGTGCGCTACACTCCAAAAGAACTACTTGAGTTTTCTAATTTATACAGGCAGAAATCTGGGGAACATGTATGGGAATGGATATTAAGGGTGTGGGATAATGGCGGAAGGAACATAAAGTTGGATCAGGCCGAATTTATTGATATGGGCTCACTAAGCAGAGATTCTGCATTTAATGTTGCAGCTCGGGGAGTTAGAAAGGGCTCTAACAGTTTGNTTGNTTGGTTGGCTGAAACATGGATCAAAAGATGGCCCACCGTGAGCGAGCTGGAAATGCCCGANCTCCCTTGGTTTAATGTAGAGGAAGGGATCCAAAGGCTTAGGGAGATTGGAATGTTGGAGTGGATTTGTCATTTAAGACCCACTCACCCACACTGGGAGGGTCCAGAAGACATNCCTTTCACCAANACTTTGAGAAATANATTTGTGAGGGGAGCNCCAGCATCCTTGAAGAGCTCTGTGATNGCTCTTCTCTGTAGGCCAGACCTTACAGTGGGAACCGCAGTCACTNAACTGGAAAACTTAAATGCAATGGGAATAATNGGATCCCGGGGTGGCAGGGGCCAAGTGGCGGCACTCAACCGCCAAAGGCAAGGTGGGCGTAGTTACCGTAATGGACAGCAGAGNCGAAGCGGCAATCAGAATAGTCTGACTCATGCAGACCTNTGGCANTGGCTAATTAATCATGGTGTTCCTAGAAGTGAAATAGATAGGAAGCCTACTAAATTCTTACTTGATCTGTATAAGCAGAAAACTTCTAGGTCNAGTGAACAAAAGTCTAACTCGAATCATAAAAACAGAGAGTCACGGCCCCTCAATCAATTCCCAGACTTGAGCCAGTTTACAGACCCAGAACCCCTTGAATGAAGGGGAGGCCGGGTCCCCTCGAGGAAGGACCCTGNTACACTACCGAAAATNTATACTGTNAATCTTTCTCCCAGCCTTCCCCAAAGGGACCTGCGGCCNTTTACCAGGGTAACTGTGCACTGGGGAAAGGGAAATANTCAGACCTTTCGGGGACTACTGGACACTGGCTCTGAACTGACACTGATTCCAGGAGACCCAAAACGTCACCGTGGCCCTCCAGTCAGAGTAGGGGCTTACGGAGGTCAGGTGATNAATGGAGTTTTAGCTCAGGTCCATCTCACAGTGGGTCCAGTGGGTCCCCGAACCCATCCTGCGGTTATTTCCCCAGTTCCAGAATGCATAATTGGAATAGACATACTTAGCAGCTGGCAGAATCCCCACATTGGTTCCCTGACCTGTGGAGTGAGGGCTATTATGGTGGGAAAGGCCAAGTGGAAGCCNCTAGAACTGCCTCTACCTAGGAAAATAGTAAATCAAAAGCAATACCGCATCCCTGGAGGAATTGCAGAGATTAGTGCCACCATCAAGGACTTGAAAGATGCAGGGGTGGTGATTCCCACCACATCCCCATTCAACTCNCCTATTTGGCCTGTGCAGAAGACAGATGGATCTTGGAGAATGACAGTGGATTATCGTAAGCTTAACCAAGTGGTGACTCCAATTGCAGCTGCTGTNCCAGATGTGGTTTCATTGCTTGAGCAAATTAACACATCCCCTGGTACCTGGTATGCAGCTATTGATCTGGCAAATGCCTTTTTCTCCATNCCTGTCCATAAGGCCCACCAGAAGCAGTTTGCTTTCAGCTGGCAAGGCCAGCAATATACCTTCACTGTCCTACCTCAGGGNTATATCAACTCTCCAGCCCTATGTCATAATTTAGTTCGCAGGGATCTTGATCGCCTTTCCCTTCCACAAGATATCACACTGGTCCATTACATTGATGACATTATGCTGATTGGACCTAGTGAGCAAGAAGTAGCAANTACTCTAGACTTATTGGTAAGACATTTGCGTGTCAGAGGGTGGGAAATAAATCCGACTAAAATTCAGGGGCCTTCTACCTCAGTGAAATTTCTAGGGGTCCAGTGGTGTGGGGCATGTCGAGATATCCCTTCTAAGGTGAAGGATAAGTTGTTGCATCTGGCCCCTCCTACAACCAAGAAAGAGGCACAACGCCTAGTGGGCCTNTTTGGATTTTGGAGGCAACATATTCCTCATTTGGGTGTGTTACTCCGGCCCATTTACCGAGTGACCCGAAAAGCTGCTAGTTTTGAGTGGGGCCCAGAACAGGAGAAGGCTCTGCAACAGGTCCAGGCTGCTGTGCAAGCTGCTCTGCCACTTGGGCCATATGATCCAGCAGATCCAATGGTGCTTGAAGTGTCAGTGGCAGATAGGGATGCTGTTTGGAGCCTTTGGCAGGCCCCTATAGGTGAATCGCAGCGCAGGCCTTTAGGATTTTGGAGCAAGGCCCTGCCATCNTCCGCAGATAACTACTCTCCTTTTGAGAGACAGCTCTTGGCCTGCTACTGGGCCTTAGTAGAGACTGAACGCTTGACCATGGGCCACCAAGTTACCATGCGACCTGAGCTGCCCATCATGAACTGGGTGTTATCTGACCCACCAAGCCATAAAGTTGGGCATGCACAGCAGCACTCCATCATCAAATGGAAGTGGTATATACGTGATCGGGCCCGAGCAGGCCCTGAAGGCACAAGTAAGTTACATGAAGAAGTGGCCCAAATGCCCATGGTCCCCACTCCTGCTACACTGCCTTCTCTCTCCCAGCCTGCACCTATGGCCTCATGGGGAGTTTCCCTACGATCAGTTGACAGAGGAAGAGAAGACTCGGGCCTGGTTTACAGATGGTTCTGCACGATATGCAGGCACCACCCGAAAGTGGACAGCTGCAGCACTACAGCCCCTTTCTGGGACATCCCTGAAGGACAGTGGTGAAGGGAAATCCTCCCAGTGGGCAGAACTTCGAGCAGTGCACCTGGTTGTGCACTTTGCTTGGAAGGAGAAATGGCCAGACGTGCGATTATATACCGATTCATGGGCTGTAGCCAATGGTTTGGCTGGATGGTCAGGGACTTGGAAGGAACATGATTGGAAAATTGGTGACAAAGAAATTTGGGGAAGAGGTATGTGGATAGACCTCTCTGAATGGGCAAAAAACGTGAAGATATTTGTGTCCCATGTGAATGCTCACCAAAGGGTGACCTCAGCAGAGGAGGATTTTAATAATCAAGTGGATAGGATGACCCGTTCTGTGGATACCAGTCAGCCTCTTTCCCCAGCCACCCTGTCATTGCCCAATGGGCTCATGAACAAAGTGGCCATGGTGGCAGGGATGGAGGTTATGCATGGGCTCAGCAACATGGACTTCCACTCACCAAGGCCGACCTGGCTACGGCCACCGCTGAGTGCCCAATCTGCCAGCAGCAGAGACCAACACTGAGCCCCCGATATGGCACCATTCCCCGGGGTGATCAGCCAGCTACCTGGTGGCAGGTTGATTACATTGGACCNCTTCCATCATGGAAGGGGCAGCGTTTTGTCCTTACTGGAATAGACACTTACTCTGGATACGGATTTGCCTTCCCTGCACGCAATGCTTCTGCCAAAACTACCATCCGTGGACTTACAGAATGCCTTATCCACCATCATGGTATTCCACACAGCATTGCTTCTGACCAAGGAACTCACTTCACAGCAAAAGAAGTGCGGCAATGGGCTCATGCTCATGGAATTCACTGGTCTTACCATGTTCCCCACCATCCTGAAGCAGCTGGCTTGATAGAACGGTGGAATGGCCTTTTGAAGACTCAGTTACAGCGCCAGCTAGGTGGCAATACCTTGCAGGGCTGGGGCAAGGTTCTCCAGAAGGCTGTATATGCTCTGAATCAGCGTCCAATATATGGTGCTGTTTCTCCCATAGCCAGGATTCACGGGTCCAGGAATCAAGGGGTGGAAATGGGAGTGGCACCACTCACTATTACCCCTAGTGACCCACTAGCAAAATTTTTGCTTCCTGTTCCCGCGACTTTATGCTCTGCTGGCCTAGAGGTCTTAGTTCCAGAGGGAGGAATGCTTCCACCAGGAGACACAACAATGATTCCATTGAACTGGAAGTTAAGACTGCCACCCGGCCACTTTGGGCTCCTCATGCCTCTGAGTCAACAGGCAAAGAAGGGAGTTACGGTGTTGGCTGGGGTGATTGATCCNGACTACCAAGGGGAAATTGGACTACTACTCCACAATGGAGGTAAGGAAGAGTATGTCTGGAATACAGGAGATCCCTTAGGGCGTCTCTTAGTATTACCATGCCCTGTGATTAAGGTCAATGGAAAACTACAACAACCCAATCCAGGCAGGACTACNAATGGCCCAGACCCTTCAGGAATGAAGGTTTGGGTCACCCCGCCAGGTAAAGAACCATGACCAGCTGAGGTGCTTGCTGAAGGCAAAGGGAATACAGAATGGGTAGTAGAAGAAGGTAGTTATAAATACCAGCTACGACCACGTGACCAGTTACAGAAACGAGGACTGTAATTGTCATGAGTATTTCCTCCTTATTTTGTTATGAATATGTTTGTGTGTATATATACATATATTAAGCAAATATCTTTGTTTTCTTTCCTCTCTTATTCCCTTATCATGTAACATAAGATGTATTGACTTTATATCAGTATTTAAGTATTGTTAATTTTACATCATAGTATTTAAGTTACGGGATATCAAGGAGAAGAGTAAACATCACTCAAGGACTTTACCTCCTCTTCTGGGGAAGGGGTTAGTGCGTTTTCGGTTGTACGCAGGATAGTTGTATCATGTTAGGTGGAATTATGACCTTGTTATTGTCTTTATTTGGAGATTAAGTATGGTTTAAGGAGATGCGTATGGGTGCCAAGTTGACAAGGGGTGGACT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERVL | TCP17 | 3576 | 3586 | + | 16.99 | ATGGTCCCCAC |
| ERVL | ZNF75A | 2246 | 2257 | - | 16.62 | GCCTTTCCCACC |
| ERVL | TCP13 | 3576 | 3586 | - | 16.58 | GTGGGGACCAT |
| ERVL | CG7928 | 2316 | 2327 | + | 16.57 | CGCATCCCTGGA |
| ERVL | TCP1 | 3104 | 3114 | - | 16.57 | CTGGGCCCCAC |
| ERVL | RVE4 | 201 | 209 | - | 16.53 | AGATATTTT |
| ERVL | ZNF211 | 3500 | 3509 | - | 16.39 | TATATACCAC |
| ERVL | RVE7 | 201 | 209 | + | 16.38 | AAAATATCT |
| ERVL | RELA | 3635 | 3644 | + | 16.30 | GGGAGTTTCC |
| ERVL | CUP2 | 704 | 714 | + | 16.27 | CAGCAGAAGTG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
