ERVL-B4
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000775 |
|---|---|
| TE superfamily | ERV3 |
| TE class | LTR |
| Species | Eutheria |
| Length | 5714 |
| Kimura value | 19.25 |
| Tau index | 0.8724 |
| Description | ERVL Endogenous retrovirus, ERVL-B4 subfamily |
| Comment | MLT2B4 LTRs. ORFs at roughly pos. 53-1792, 1793-5344. |
| Sequence |
GATTTTGGTACCGAGAGTGGTTCTAGAGGAACAGAATTTTAAGGATGAGTTTTCTGAATTGGTTCTGGGGTTTCTGGAATTGGCTCTCTAATCTGATTAGATTTAAAGACGCTAATGACTCTATTTCCAGTAGTAAAGAGAGCACTGATAGTCCATGGCGTGATCTGGCAATAGAGATACGCAAAATATCNCCATTGGATACTCCTAATCAACCACTTATAAGAAGCAAGGANCTGGGTGACTNTGTATATGATACTTTCGAACATTTTTGGNAAACTAACGAATATAATGAGATTGGCTGGTTGCTCCTAATGTCGCTGGACAAAGTGGNGAAAGAAAAGGATGAGCTCAGGGATTCGAATTCCCAGCTCAAGCGCCGCATAAATGACCTGAAAGCTTCTATGTGTGCCCTGAAGGAGACCCTTATCTCCTGTAGCCGCAGGGCTGAGATTGCTGAAAATCAAACGCAGAATCTCATCCTGCGACTGGCTGAATTACAACGCAAGTTGAACTCCCAGCCTCGCAGGGTGTCTACTGTTAAAGTGAGGGCATTGATTGGGAAAGAATGGGATCCTGNAAGTTGGAATGGGGACGTGTGGGAAGACCCTGATGAAGCTGGGGACATTGAGCCCCTAAATTCTGATGAGTCTTCTTTGCCAGTGGAAGNGGCCTCCCCACCCCCAGTGGAAGCGGCCTCCCCACCCCCAGTGGTAGCGGCCTCTCCACCCCCGTCTGAGGGGATTAACCCTGCATTGCCTGAGGAAACTGTAATGGCCTCCCCTGAGGCAGTTGCCATGCAAGACAATGCTGATTCTCCTCAGGACCCACCCCCACCACCCCTCTTTGCTTCTAGACCTATAACTAGACTCAAGTCCCAGCAGGCCCCTAAAGGTGAGGTACAAAGTGTGACCCATGAGGAGGTGCGCTACACTCCAAAAGAACTACTTGAGTTTTCTAATTTATACAGACAGAAATCCGGGGAACATGTGTGGGAATGGATATTAAGGGTGTGGGATAATGGTGGAAGGAACATAAAGTTGGATCAGGCCGAATTTATTGATATGGGCCCACTAAGCAGAGATTCTGCATTTAATGTTGCAGCTCGGGGAGTTAGAAAGGGCTCTAACAGTTTGTTTGGTTGGTTGGCTGAAACATGGACCAAAAGGTGGCCCACAGTGAGCGAATTGGAAATGCCGGACCTGCCTTGGTTTAATGTAGAGGAAGGGATTCAAAGGCTTAGGGAGATTGGAATGTTAGAGTGGATTTGTCATTTAAGACCTACTCACCCACACTGGGAGGGTCCAGAAGACATACCTTTCACCANNACTGTGAGAAATAAATTTGTGAGGGGAGCCCCAGCATCCTTGAAGAGCTCTGTGATCGCTCTTCTCTGTAGGCCAGACCTTACAGTGGGAACTGCAGCCACTGAATTGGGAAACCTAAATGCAATGGGAGTAATTGGATCCCGGGGTGGCAGGGGCCAAGTGGCGGCACTCAACCGCCAAAGGCAAGGTGGGCGTGGTTACCGTAATGGACAGCAGAGTCAAAGCAGCAATCAGAATAGTCTGACTCGCGCAGACCTATGGCGTTGGCTAGTTGATCATGGTGTTCCTAGAAGTGAAATAGATAGGAAGCCTACTAAATTCTTACTTGATCTGTATAAGCAGAAAAGTTCTAGGTCAAGTGAACAAAAGTCTAACTTGAATCATAAAAACAGAGAGTCACGGCCCCTCAATCAATTCCCAGACTTGAGCCAGTTTACAGACCCAGAACCCCTTGAATGAAGGGGAGGCCGGGTCCCCTTGAGGAAGGACCCCGGTACACTGCCAAAAATTTATACTGTTAATCTTTCTCCCAGCCTTCCCCAAAGGGACCTACGGCCTTTTACCAGGGTAACTGTGCATTGGGGAAAAGGAAATAATCAGACCTTTCGGGGACTACTGGACACTGGCTCTGAACTGACACTAATTCCAGGAGACCCAAAACGTCACTGTGGTCCACCAGTCAGAGTAGGGGCTTATGGAGGTCAGGTGATCAATGGAGTTTTAGCTCAGGTCCGTCTCACAGTGGGCCCAGTGGGTCCCCGAACCCATCCTGTGGTTATTTCCCCAGTTCCGGAATGCATAATTGGAATAGACATACTCAGCAGCTGGCAGAATCCCCACATTGGTTCCCTGACCTGTGGAGTGAGGGCTATTATGGTGGGAAAGGCCAAGTGGAAGCCACTAGAACTGCCTCTACCTAGGAAAATAGTAAACCAAAAGCAATACCGCATTCCTGGAGGGATTGCAGAGATTAGTGCCACCATCAAGGACTTGAAAGATGCAGGGGTGGTGATTCCCACCACATCCCCATTCAACTCGCCTATTTGGCCTGTGCAGAAGACAGATGGATCTTGGAGAATGACAGTGGATTATCGTAAGCTTAACCAGGTGGTGACTCCAATTGCAGCTGCTGTACCAGATGTGGTTTCATTGCTTGAGCAAATTAACACATCCCCTGGTACCTGGTATGCAGCTATTGATCTGGCAAATGCCTTTTTCTCCATACCTGTCAATAAGGNCCACCAGAAGCAGTTTGCTTTCAGCTGGCAAGGCCAGCAATACACCTTCACTGTCCTACCTCAGGGGTATATCAACTCTCCAGCCCTATGTCATAATTTAGTTCGCAGGGATCTTGATCGCCTTTCCCTTCCACAAGATATCACACTGGTCCATTACATTGATGACATTATGCTGATTGGACCTAGTGAGCAAGAAGTAGCAACTACTCTAGACTTATTGGTAAGACATTTGCGTGTCAGAGGGTGGGAAATAAATCCGACAAAAATTCAGGGGCCTTCTACCTCAGTGAAATTTCTAGGGGTCCAGTGGTGTGGGGCATGTCGAGATATCCCTTCTAAGGTGAAGGATAAGTTGTTGCATCTGGCCCCTCCTACAACCAAAAAAGAGGCACAATGCCTAGTGGGCCTCTTTGGATTTTGGAGGCAACATATTCCTCATTTGGGTGTGTTACTCCGGCCCATTTACCGAGTGACCCGAAAAGCTGCTAGTTTTGAGTGGGGCCCAGAACAAGAGAAGGCTCTGCAACAGGTCCAGGCTGCTGTGCAAGCTGCTCTGCCACTTGGGCCATATGATCCAGCAGATCCAATGGTGCTTGAAGTGTCAGTGGCAGATAGGGATGCTGTTTGGAGCCTTTGGCAGGCCCCTATAGGTGAATCGCAGCGCAGGCCCTTAGGATTTTGGAGCAAAGCCCTGCCATCCTCTGCAGATAACTACTCTCCTTTTGAGAAACAGCTCTTGGCCTGCTACTGGGCCTTAGTAGAGACTGAACGCTTAACCATGGGCCACCAAGTTACCATGCGACCTGAGCTGCCCATCATGAACTGGGTGTTATCTGACCCACCAAGCCATAAAGTTGGGCGTGCACAGCAGCACTCCATCATCAAATGGAAGTGGTATATACGTGATCGGGCCCGAGCAGGCCCTGAAGGCACAAGTAAGTTACATGAAGAAGTGGCCCAAATGCCCATGGTCCCCACTCCTGCTACACTGCCTTCTCTCTCCCAGCCTGCACCTATGGCCTCATGGGGAGTTCCCTACGATCAGTTGACAGAGGAAGAGAAGACTCGGGCCTGGTTTACAGATGGTTCTGCACGATATGCAGGCACCACCCGAAAGTGGACAGCTGCAGCACTACAGCCCCTTTCTGGGACATCCCTGAAGGACAGTGGTGAAGGGAAATCCTCCCAGTGGGCAGAACTTCGAGCAGTGCACCTGGTTGTTCACTTTGCTTGGAAGGAGAAATGGCCAGACGTGCGATTATATACCGATTCATGGGCTGTGGCCAATGGTTTGGCTGGATGGTCAGGGACTTGGAAGGAACATGATTGGAAAATTGGTGACAAGGAAATTTGGGGAAGAGGTATGTGGATAGACCTCTCTGAATGGGCAAAAAACGTGAAGATATTTGTGTCCCATGTGAATGCTCACCAAAGGGTGACCTCAGCAGAGGAGGATTTTAATAATCAAGTGGATAGGATGACCCGTTCTGTGGATACCAGTCAGCCTCTTTCCCCAGCCACCCCTGTCATCGCCCAATGGGCTCATGAACAAAGTGGCCATGGTGGCAGGGATGGAGGTTATGCATGGGCTCAGCAACATGGACTTCCACTCACCAAGGCCGACCTGGCTACGGCCACCGCTGAGTGCCCAATCTGCCAGCAGCAGAGACCAACACTGAGTCCCCGATATGGCACCATTCCCCGGGGTGATCAGCCAGCTACCTGGTGGCAGGTTGATTACATTGGACCGCTTCCATCATGGAAGGGGCAGCGTTTTGTTCTTACTGGAATAGACACTTACTCTGGATACGGATTTGCCTTCCCTGCACGCAATGCTTCTGCCAAAACTACCATCCGTGGACTTACAGAATGCCTTATCCACCGTCATGGTATTCCACACAGCATTGCTTCTGATCAAGGAACTCACTTCACAGCAAANGAAGTGCGGCAATGGGCCCATGCTCATGGAATTCACTGGTCTTACCATGTTCCCCACCATCCTGAAGCAGCTGGCTTGATAGAACGGTGGAATGGCCTTTTGAAGACTCAGTTACAGCGCCAGCTAGGTGGCAATACCTTGCAGGGCTGGGGCAAGGTTCTCCAGAAGGCTGTATATGCTCTGAATCAGCGTCCAATATATGGTGCTGTTTCTCCCATAGCCAGGATTCACGGGTCCAGGAATCAAGGGGTGGAAATGGGAGTGGCACCACTCACTATTACCCCTAGTGACCCACTAGCAAAATTTTTGCTTCCTGTTCCCGCGACCTTATGCTCTGCTGGCCTAGAGGTCTTAGTTCCAAAGGGAGGAATGCTTCCACCAGGAGACACAACAATGATTCCATTGAACTGGAAGTTAAGACTGCCACCCGGCCACTTTGGGCTCCTCATGCCTCTGAATCAACAGGCAAAGAAGGGAGTTACTGTGCTGGCTGGGGTGATTGATCCTGACTACCAAGGGGAAATTGGACTGCTACTCCACAATGGAGGTAAGGAAGAGTATGTCTGGAATACAGGAGATCCCTTAGGGCGTCTCTTAGTATTACCATGCCCTGTGATTAAGGTCAATGGAAAACTACAACAACCCAATCCAGGCAGGACTACTAATGGCCCAGACCCTTCAGGAATGAAGGTTTGGGTCACCCCACCAGGTAAAGAACCACGACCAGCTGAGGTGCTTGCTGAAGGCAAAGGGAATACGGAATGGGTAGTGGAAGAAGGTAGTTATAAATACCAGCTACGACCACGTGACCAGTTACAGAAACGAGGACTGTAATTGTCATGAGTATTTCCTCCTTATTTTGTTATGAATATGTTTGTGTGTATATATACATATATTAAGCAAATATCTTTGTTTTCTTTCCTCTCTTATTCCCTTATCATGTAACATAAGATGTATTGACTTTATATCATAGTATTTAAGTATTGTTAATTTTACATCATAGTATTTAAGTTACGGGATATCAAGGAGAAGAGTAAACATCACTCAAGGACTTTACCTCCTCTTCTGGGGAAGGGGTTAGTGCGTTTTCGGTTGTACGCAGGATAGTTGTATCATGTTAGGCGGAATTATGACCTTGTTATTGTCTTTATTTGGAGATTAAGTATGGTTTAAGGAGATGCGTATGGGTGCCAAGTTGACAAGGGGTGGACT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERVL-B4 | ZNF211 | 3455 | 3464 | - | 16.39 | TATATACCAC |
| ERVL-B4 | TCP23 | 1064 | 1071 | + | 16.36 | GGGCCCAC |
| ERVL-B4 | TCP23 | 2067 | 2074 | - | 16.36 | GGGCCCAC |
| ERVL-B4 | ERF014 | 4436 | 4450 | + | 16.33 | CCTTATCCACCGTCA |
| ERVL-B4 | ZNF816 | 587 | 601 | + | 16.25 | TGGGGACGTGTGGGA |
| ERVL-B4 | ZNF331 | 4150 | 4159 | - | 16.18 | TGCTGAGCCC |
| ERVL-B4 | KLF3 | 1515 | 1524 | - | 16.09 | AACCACGCCC |
| ERVL-B4 | LjSGA_053525.1 | 1064 | 1071 | + | 16.05 | GGGCCCAC |
| ERVL-B4 | LjSGA_053525.1 | 2067 | 2074 | - | 16.05 | GGGCCCAC |
| ERVL-B4 | SREBF1 | 5199 | 5208 | + | 16.05 | GTCACCCCAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
