ERVL-B4
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000775 |
|---|---|
| TE superfamily | ERV3 |
| TE class | LTR |
| Species | Eutheria |
| Length | 5714 |
| Kimura value | 19.25 |
| Tau index | 0.8724 |
| Description | ERVL Endogenous retrovirus, ERVL-B4 subfamily |
| Comment | MLT2B4 LTRs. ORFs at roughly pos. 53-1792, 1793-5344. |
| Sequence |
GATTTTGGTACCGAGAGTGGTTCTAGAGGAACAGAATTTTAAGGATGAGTTTTCTGAATTGGTTCTGGGGTTTCTGGAATTGGCTCTCTAATCTGATTAGATTTAAAGACGCTAATGACTCTATTTCCAGTAGTAAAGAGAGCACTGATAGTCCATGGCGTGATCTGGCAATAGAGATACGCAAAATATCNCCATTGGATACTCCTAATCAACCACTTATAAGAAGCAAGGANCTGGGTGACTNTGTATATGATACTTTCGAACATTTTTGGNAAACTAACGAATATAATGAGATTGGCTGGTTGCTCCTAATGTCGCTGGACAAAGTGGNGAAAGAAAAGGATGAGCTCAGGGATTCGAATTCCCAGCTCAAGCGCCGCATAAATGACCTGAAAGCTTCTATGTGTGCCCTGAAGGAGACCCTTATCTCCTGTAGCCGCAGGGCTGAGATTGCTGAAAATCAAACGCAGAATCTCATCCTGCGACTGGCTGAATTACAACGCAAGTTGAACTCCCAGCCTCGCAGGGTGTCTACTGTTAAAGTGAGGGCATTGATTGGGAAAGAATGGGATCCTGNAAGTTGGAATGGGGACGTGTGGGAAGACCCTGATGAAGCTGGGGACATTGAGCCCCTAAATTCTGATGAGTCTTCTTTGCCAGTGGAAGNGGCCTCCCCACCCCCAGTGGAAGCGGCCTCCCCACCCCCAGTGGTAGCGGCCTCTCCACCCCCGTCTGAGGGGATTAACCCTGCATTGCCTGAGGAAACTGTAATGGCCTCCCCTGAGGCAGTTGCCATGCAAGACAATGCTGATTCTCCTCAGGACCCACCCCCACCACCCCTCTTTGCTTCTAGACCTATAACTAGACTCAAGTCCCAGCAGGCCCCTAAAGGTGAGGTACAAAGTGTGACCCATGAGGAGGTGCGCTACACTCCAAAAGAACTACTTGAGTTTTCTAATTTATACAGACAGAAATCCGGGGAACATGTGTGGGAATGGATATTAAGGGTGTGGGATAATGGTGGAAGGAACATAAAGTTGGATCAGGCCGAATTTATTGATATGGGCCCACTAAGCAGAGATTCTGCATTTAATGTTGCAGCTCGGGGAGTTAGAAAGGGCTCTAACAGTTTGTTTGGTTGGTTGGCTGAAACATGGACCAAAAGGTGGCCCACAGTGAGCGAATTGGAAATGCCGGACCTGCCTTGGTTTAATGTAGAGGAAGGGATTCAAAGGCTTAGGGAGATTGGAATGTTAGAGTGGATTTGTCATTTAAGACCTACTCACCCACACTGGGAGGGTCCAGAAGACATACCTTTCACCANNACTGTGAGAAATAAATTTGTGAGGGGAGCCCCAGCATCCTTGAAGAGCTCTGTGATCGCTCTTCTCTGTAGGCCAGACCTTACAGTGGGAACTGCAGCCACTGAATTGGGAAACCTAAATGCAATGGGAGTAATTGGATCCCGGGGTGGCAGGGGCCAAGTGGCGGCACTCAACCGCCAAAGGCAAGGTGGGCGTGGTTACCGTAATGGACAGCAGAGTCAAAGCAGCAATCAGAATAGTCTGACTCGCGCAGACCTATGGCGTTGGCTAGTTGATCATGGTGTTCCTAGAAGTGAAATAGATAGGAAGCCTACTAAATTCTTACTTGATCTGTATAAGCAGAAAAGTTCTAGGTCAAGTGAACAAAAGTCTAACTTGAATCATAAAAACAGAGAGTCACGGCCCCTCAATCAATTCCCAGACTTGAGCCAGTTTACAGACCCAGAACCCCTTGAATGAAGGGGAGGCCGGGTCCCCTTGAGGAAGGACCCCGGTACACTGCCAAAAATTTATACTGTTAATCTTTCTCCCAGCCTTCCCCAAAGGGACCTACGGCCTTTTACCAGGGTAACTGTGCATTGGGGAAAAGGAAATAATCAGACCTTTCGGGGACTACTGGACACTGGCTCTGAACTGACACTAATTCCAGGAGACCCAAAACGTCACTGTGGTCCACCAGTCAGAGTAGGGGCTTATGGAGGTCAGGTGATCAATGGAGTTTTAGCTCAGGTCCGTCTCACAGTGGGCCCAGTGGGTCCCCGAACCCATCCTGTGGTTATTTCCCCAGTTCCGGAATGCATAATTGGAATAGACATACTCAGCAGCTGGCAGAATCCCCACATTGGTTCCCTGACCTGTGGAGTGAGGGCTATTATGGTGGGAAAGGCCAAGTGGAAGCCACTAGAACTGCCTCTACCTAGGAAAATAGTAAACCAAAAGCAATACCGCATTCCTGGAGGGATTGCAGAGATTAGTGCCACCATCAAGGACTTGAAAGATGCAGGGGTGGTGATTCCCACCACATCCCCATTCAACTCGCCTATTTGGCCTGTGCAGAAGACAGATGGATCTTGGAGAATGACAGTGGATTATCGTAAGCTTAACCAGGTGGTGACTCCAATTGCAGCTGCTGTACCAGATGTGGTTTCATTGCTTGAGCAAATTAACACATCCCCTGGTACCTGGTATGCAGCTATTGATCTGGCAAATGCCTTTTTCTCCATACCTGTCAATAAGGNCCACCAGAAGCAGTTTGCTTTCAGCTGGCAAGGCCAGCAATACACCTTCACTGTCCTACCTCAGGGGTATATCAACTCTCCAGCCCTATGTCATAATTTAGTTCGCAGGGATCTTGATCGCCTTTCCCTTCCACAAGATATCACACTGGTCCATTACATTGATGACATTATGCTGATTGGACCTAGTGAGCAAGAAGTAGCAACTACTCTAGACTTATTGGTAAGACATTTGCGTGTCAGAGGGTGGGAAATAAATCCGACAAAAATTCAGGGGCCTTCTACCTCAGTGAAATTTCTAGGGGTCCAGTGGTGTGGGGCATGTCGAGATATCCCTTCTAAGGTGAAGGATAAGTTGTTGCATCTGGCCCCTCCTACAACCAAAAAAGAGGCACAATGCCTAGTGGGCCTCTTTGGATTTTGGAGGCAACATATTCCTCATTTGGGTGTGTTACTCCGGCCCATTTACCGAGTGACCCGAAAAGCTGCTAGTTTTGAGTGGGGCCCAGAACAAGAGAAGGCTCTGCAACAGGTCCAGGCTGCTGTGCAAGCTGCTCTGCCACTTGGGCCATATGATCCAGCAGATCCAATGGTGCTTGAAGTGTCAGTGGCAGATAGGGATGCTGTTTGGAGCCTTTGGCAGGCCCCTATAGGTGAATCGCAGCGCAGGCCCTTAGGATTTTGGAGCAAAGCCCTGCCATCCTCTGCAGATAACTACTCTCCTTTTGAGAAACAGCTCTTGGCCTGCTACTGGGCCTTAGTAGAGACTGAACGCTTAACCATGGGCCACCAAGTTACCATGCGACCTGAGCTGCCCATCATGAACTGGGTGTTATCTGACCCACCAAGCCATAAAGTTGGGCGTGCACAGCAGCACTCCATCATCAAATGGAAGTGGTATATACGTGATCGGGCCCGAGCAGGCCCTGAAGGCACAAGTAAGTTACATGAAGAAGTGGCCCAAATGCCCATGGTCCCCACTCCTGCTACACTGCCTTCTCTCTCCCAGCCTGCACCTATGGCCTCATGGGGAGTTCCCTACGATCAGTTGACAGAGGAAGAGAAGACTCGGGCCTGGTTTACAGATGGTTCTGCACGATATGCAGGCACCACCCGAAAGTGGACAGCTGCAGCACTACAGCCCCTTTCTGGGACATCCCTGAAGGACAGTGGTGAAGGGAAATCCTCCCAGTGGGCAGAACTTCGAGCAGTGCACCTGGTTGTTCACTTTGCTTGGAAGGAGAAATGGCCAGACGTGCGATTATATACCGATTCATGGGCTGTGGCCAATGGTTTGGCTGGATGGTCAGGGACTTGGAAGGAACATGATTGGAAAATTGGTGACAAGGAAATTTGGGGAAGAGGTATGTGGATAGACCTCTCTGAATGGGCAAAAAACGTGAAGATATTTGTGTCCCATGTGAATGCTCACCAAAGGGTGACCTCAGCAGAGGAGGATTTTAATAATCAAGTGGATAGGATGACCCGTTCTGTGGATACCAGTCAGCCTCTTTCCCCAGCCACCCCTGTCATCGCCCAATGGGCTCATGAACAAAGTGGCCATGGTGGCAGGGATGGAGGTTATGCATGGGCTCAGCAACATGGACTTCCACTCACCAAGGCCGACCTGGCTACGGCCACCGCTGAGTGCCCAATCTGCCAGCAGCAGAGACCAACACTGAGTCCCCGATATGGCACCATTCCCCGGGGTGATCAGCCAGCTACCTGGTGGCAGGTTGATTACATTGGACCGCTTCCATCATGGAAGGGGCAGCGTTTTGTTCTTACTGGAATAGACACTTACTCTGGATACGGATTTGCCTTCCCTGCACGCAATGCTTCTGCCAAAACTACCATCCGTGGACTTACAGAATGCCTTATCCACCGTCATGGTATTCCACACAGCATTGCTTCTGATCAAGGAACTCACTTCACAGCAAANGAAGTGCGGCAATGGGCCCATGCTCATGGAATTCACTGGTCTTACCATGTTCCCCACCATCCTGAAGCAGCTGGCTTGATAGAACGGTGGAATGGCCTTTTGAAGACTCAGTTACAGCGCCAGCTAGGTGGCAATACCTTGCAGGGCTGGGGCAAGGTTCTCCAGAAGGCTGTATATGCTCTGAATCAGCGTCCAATATATGGTGCTGTTTCTCCCATAGCCAGGATTCACGGGTCCAGGAATCAAGGGGTGGAAATGGGAGTGGCACCACTCACTATTACCCCTAGTGACCCACTAGCAAAATTTTTGCTTCCTGTTCCCGCGACCTTATGCTCTGCTGGCCTAGAGGTCTTAGTTCCAAAGGGAGGAATGCTTCCACCAGGAGACACAACAATGATTCCATTGAACTGGAAGTTAAGACTGCCACCCGGCCACTTTGGGCTCCTCATGCCTCTGAATCAACAGGCAAAGAAGGGAGTTACTGTGCTGGCTGGGGTGATTGATCCTGACTACCAAGGGGAAATTGGACTGCTACTCCACAATGGAGGTAAGGAAGAGTATGTCTGGAATACAGGAGATCCCTTAGGGCGTCTCTTAGTATTACCATGCCCTGTGATTAAGGTCAATGGAAAACTACAACAACCCAATCCAGGCAGGACTACTAATGGCCCAGACCCTTCAGGAATGAAGGTTTGGGTCACCCCACCAGGTAAAGAACCACGACCAGCTGAGGTGCTTGCTGAAGGCAAAGGGAATACGGAATGGGTAGTGGAAGAAGGTAGTTATAAATACCAGCTACGACCACGTGACCAGTTACAGAAACGAGGACTGTAATTGTCATGAGTATTTCCTCCTTATTTTGTTATGAATATGTTTGTGTGTATATATACATATATTAAGCAAATATCTTTGTTTTCTTTCCTCTCTTATTCCCTTATCATGTAACATAAGATGTATTGACTTTATATCATAGTATTTAAGTATTGTTAATTTTACATCATAGTATTTAAGTTACGGGATATCAAGGAGAAGAGTAAACATCACTCAAGGACTTTACCTCCTCTTCTGGGGAAGGGGTTAGTGCGTTTTCGGTTGTACGCAGGATAGTTGTATCATGTTAGGCGGAATTATGACCTTGTTATTGTCTTTATTTGGAGATTAAGTATGGTTTAAGGAGATGCGTATGGGTGCCAAGTTGACAAGGGGTGGACT
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERVL-B4 | ZNF281 | 697 | 706 | - | 17.16 | GGGGGTGGGG |
| ERVL-B4 | odd | 3305 | 3315 | - | 17.08 | CCCAGTAGCAG |
| ERVL-B4 | Usf | 5303 | 5312 | + | 17.05 | ACCACGTGAC |
| ERVL-B4 | TCP17 | 3531 | 3541 | + | 16.99 | ATGGTCCCCAC |
| ERVL-B4 | CG3065 | 1513 | 1523 | - | 16.87 | ACCACGCCCAC |
| ERVL-B4 | SP9 | 1513 | 1522 | - | 16.80 | CCACGCCCAC |
| ERVL-B4 | ZNF75A | 2201 | 2212 | - | 16.62 | GCCTTTCCCACC |
| ERVL-B4 | TCP13 | 3531 | 3541 | - | 16.58 | GTGGGGACCAT |
| ERVL-B4 | TCP1 | 3059 | 3069 | - | 16.57 | CTGGGCCCCAC |
| ERVL-B4 | SREBP | 155 | 164 | - | 16.46 | ATCACGCCAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
