DIRS-1a_Amnio
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0006271 |
|---|---|
| TE superfamily | DIRS |
| TE class | LTR |
| Species | Amniota |
| Length | 5475 |
| Kimura value | 24.05 |
| Tau index | 0.0000 |
| Description | Long Terminal Repeat for an DIRS endogenous retrovirus |
| Comment | 20% subst outside CGs in painted turtle. Probably Amniota-wide |
| Sequence |
TTTCTGTTGCACAGCTTCTCTCCTCATTCGTTACTNATGGGCTAATGCCCCCCGCCTGCGGAATTCGGAGGCAGTCCAGTGTTGTTGCTGGAGCCCGNGCTGGCCACGCCCCCTTCTTCAGCTCGCCGCCAGATTTTCTGCCTCCGCGGCGGAACAAGTTGGCGGTTCAGTTTGCTCCCGACCATTTCGTTTTCAACTTTTATTTTTATTCATTTTTGNGCAGTAGCGAGCAACTTNTTCTTCCCCTCTTCCTCCTCCTCCCTGGATCGGTTAGCAGCGTGGTGGTTTCAGCCACCCGGATCCGCCGCTGCAGCGCCTCCCTGCCGGACTCCTCTGCCCCCGCTCAGGCATGGCAGAGCTGTCCCGCAAACACCGGGCTAAATCTAAGCGGTGTTCCCTATGTGAGGCAGCATTTACAGGCTCTNCAGAGGGCGAATTATGCCCTGCCTGTTCNCAGCCAGCCGACCCTCGCACTGCCAGGGCACGGGGCTCAGAGTCGGACCGGCATGTCGGGTCCCCACCCTGCCCCGAGGAGCCGCGACTCCAACGCAGAAAAGCCCGATCAGGAGCTTCTGAGCATTCGGGGAGAGAGTCTAAGGACGAGGAGGACGCTATCCGGCCAGCTCAGGGGGTAAGTCCCGCAACAGACCCGGGCCGGAGGGAAAAAACCCTTAAAGGACCCAAAGTCCCCCCCCCAGATACTGAAGTGGGTCCTCAGCTCCCTGGGGAAAGAAGCAGGGCTCCTACACAGCTCCCCTTCCTCCCANCGCGAATCGGGGGATTCTCGCGATGAGACCCCATCCCCCAGGCAGGGGGAGTGGGACCCCGAGGGGGAGGACACNGAGGGAGACATATCCAGAGGGCTCAAGGCGCTGNATAAAGAGCCGCAAGAGACCNCGCCCTGGCCACAGCCGGGCGGCAACNCCTGCAAAGCGGGCGAAAAGGGCCAAAAAACCAAAAAGAACAAAAGGGAAAGAAAAAATATAAAAAATCTAAGAGGTATTCGTCCTCTGACTCAGACACCTCCTCCTCTACTGAGGAAGGGGAGCTCTCAGATTCAGGCTCTGAGCAGGACATGGAAAAAATGCAGCAAAGGTTTCTTCCCCCTGANANATTTGAAACCATGTGCAGAAAGGTTGCATCCGCNATCCAGATCCAACCNGAGCAGGCACNNGAGGACAAGCCTAAGGGCAAATACCTGCCTTCCAAATCCTCGCCTGAGACAGCAATCCCGCTGCACCCATCCTTTGAGGATGTGATCAGGGAGGAATGGGAAANCCCTGACAAGGGTAAGCGCATAAGCAGGCATGCACTTAGATACTACAAGNTGCAAGAGCCAAAAAATGCCATCACAGANATACCAAAGGTCGATGCTGCGGTGGCATCTCTAGCAAAAGATATGGTAATCCCATCCGAAGGGGATTTCTTTCCCAAAGATNCAACTGATAGAAAGGTGGAAGCCACCCTAGAAGGGACTTTGAGGCTTCGTCGGCCGCCCTTAGAGCGTCCCTGGCCGCTACATGCTTCGCAAGAGCCACAGTGTCCTGGCTGGATGACCTTAAGGCCGTGAAGGACAGGGACCATCCTGACTTCCGGTCTACNCTTAAGAAAATNTCCCTAGCAACAGCCTTTGTGGCAGATGCCTCAATGGATGCAATGAGATTCTCAGCCAGGGCCATGGCATCCAGCTCAGCAGCCAGGCGCCACATCTGGCTNCGCCCCTGGAAGGCNGACGCTCACTCCAAACAAATCCTGTGCTCATCTAAATTCACAGGCTCTCTCCTNTTTGGGGAAAAACTGGATAAGATAGTGGCAGANAGCGCTGCCAAACCGAAACAGTCCCTCCCCTCCCCACNCAGTGCTCTGAGGAGGGACTACAAGCCCAGCAACAGACAGAAACGCTCCTTTCGTCCATCCTCCTCACAAAAGTACCAGAGGAAAGACAGCAGGTATATCAGGGGAAAACCCTGGAACCGNGGATCGGGTGGAAAATCCAGAGGTGGNNCCGCCGCCTCTAAGAGCCCACTATGACAACGAACGAATGTGCCTCCGCCCAGACCTGAATCTAGGAGGCAGAATTTCCCACTTCTCAGAAGAATGGTCTCNATCGACCACAGACAAGTGGGTGAGAGAGGTAGTGAGTTGCGGATACTCCCTCGAACTAAGGGCCCCACCCCATCCCTTCTTCATCCAATCCCCCATCTCGAGCGACCCCATCAAACGCGAGCTGGTGTTAAACGAAATCTCGCATCTCCTGGACATAGGAGCAATAGAAAGGGTTCCCTCAGAAGAAAGGTTCTTAGGACTATACTCCATTTTCTTCATCGTCCAGAAGCGTACGGGGGGAGTCAGAGCCGTCCTGGATCTCAAGCGGCTCAACAAATGGATGAAGAAAACGAGATTCCGGATGGAGACCCTAGCTTCGACGGTAGCATCCCTGTCCCAAGGGGACTTCCTCGCTTCTGTGGACCTAGCAGATGCATATCTCCACATTCCCATACGACCATGCCACCGCAGACTGCTGAGATTTGCGTACGGCACGGCCCACTACCAGTACCAAACGCTNCCATTTGGCCTTTCGTCNGCCCCCAGGGTCTTTACCAAGATGCTGGTGGTAGTNATAGCCAGACTCAGGTCTCAGGGCACTCACCTGTATCCCTTCCTAGACGACATCTTGATCAGAGCTCCGACCCAAGNAGCAGCACGCAGTGCCACAATCCGGACGCTGGANCTGCTTCAAGCACACGGNTTCGTGATAAACACCAAGAAGAGCTCCTTGATTCCCTCCGCAAAGATAGTTCACCTGGGAGTGGAAATAGACACNTCTGTGGCAAAGGTCTACCCATCACTGGACAGATTCCANAAGATCCAGAACCTGATATCCATGTTGGTAAGGTGCGCAAGGCCGNCCATAGCTCAGTGTCTNCAGCTACTGGGCCTCCTGGTTTCGTGTATAGGAATCACCCCATGGGCGAGGTCCCATATCAGGTGCCTCCAGGNNTTTCTCCTGAAAGTATGGAACCATTCACCGGAACGCATGCAAGATCAGGTGCCGGTCCCGAACCAGGTNCTGGACTCCCTNAGATGGTGGACAATCCCANAGAACGTCCGCAAGGGTCTTCCCATATGCCTTCCAGACCCACAGGTACTCACAACNGATGCCAGCCTGACGGGATGGGGAGCGCATCTGGGGCACAGGACAGCGCAAGGCACCTGGAACTCCAGGGAAAGGAACCAGAGCATCAACCTNTTGGAGCTCAGAGCTGTCAAGCTAGCCCTACGAAGGTTCCAGAGCCACCTAGAGGGCGANCACGTTCTGGTCCAGTCGGACAACACGACCACTGTGGCGTATNTCAACAACCAAGGGGGAACNNGGAGCGTAACTCTACACGCAGAAGCGATGGAGATAATGGAATGGGCAGAGAGGACTCTCCCTTCCATAAGAGCAATACACATAAAAGGAGAGCTGAACCAAAAGGCAGACTGGCTCAGCAGATGCGCAGTCAACAACTCAGAATGGTGCCTGAATCAGGAAGTCTTCANTCTGATTTCGCAGAAGTTCGGCCTCCCGGCAGTCGACCTGTTTGCCAGTCGCAAGAACANAAAGCGGCCGAAGTACTTCACCAGGGAAGCAGATCCCAAGTCCCTGGGGACGGATGCTCTTTCGCACAGATGGCCACAAGGCCTGCTNTACGCATTCCCGCCCTTTCCACTTCTAGGAAAGGTGATCCAGAAGATAAGGCGAGAAGAAGCAAAGGTGATAGTGCTAGCTCCGCACTGGCCAAGGAGACCATGGTTCTCCGATCTGATAGAACTGAAATTGGAACCACCATTGCAGCTACCAGTGAGACCAGACATCCTTTACCAAGGCCCATTCCTCCATCCAGACCCAGACCGTCTACAACTGACAGCCTGGCTATTGAGAGGGAAGCGTTAGCCGCGCTCGGACTATCCTCCAAAGTGATTGGAACTCTACTCTCCTCCAGGCGAGCTTCAACGCTAAAGGCCTACTCCTCCATCTGGACTAGGTTTAGCTCATGGTGTCAAGAACACAACAAAAATCCCAAGGATCCTGGTATCCCAGTTATCCTGGACTTTCTTCAGGAAGGCGTGGACAAGGGACTTCAGCCCAGCACCGTAGCGCGCCAGGTGTCAGCCATAAGTAGCGTCCTACTCGCAGGATCCTCTGGTTCCTTGACAGAGAACCCTCAGGTATCCAGATTTCTCAGAGCAGTCAGACTGGCTAGACCTGCGGTCAGACCAATCTTTCCTAAGTGGGACCTACCACTGGTGCTAAAAGCCCTAACCACCCACCCTTTTGAGCCACTGACATCGATATCTCCATTCTACCTATCCATCAAAACCTGTTTTCTGGTCGCCATCACGTCTGCTAGACGAGTTTCTGAACTGGCAGCTTTATCCATGCAGGAACCNCACTGTGTGTTCCATGATGACAAGGTGGTGCTAAGAACCCCAGAATCTTTCTTGCCTAAGGTGAATTCATCTTTCCATGCCTCACAGGAGATCGTCCTCCCTTCATTCTGTCCAAAGCCACAGCATCCNACAGAAAAGCTGTGGCACANTNTGGATGTTCGNAGAGCACTAAAGATCTATATCAAGCGCACCGAATCGACAAGAAGATCGGGCTCCTTGTTCGTCTCCTTTCATCCGAAGTGCCAAGGGCTCAGGGTATCCAAGCTATCGCTGGCTAGATGGATCAAGCTATGCATCGTAGAGGCATACAAGGCGTCAGGTGCTCCTGTTCCAGACGGAATCAAGGCACACTCCACAAGATCTATGGCGACTTCGTGGGCAGAAAGAGCTTGTGCTTCCACCGCAGAGATCTGCAGGGCAGCAACGTGGTCATCGGTTAACACCTTTATTAGACACTATAAAGTGGACTTTCTGTCCTCTGCAGAGGCCTCCTTTGGCAGGAAGGTGCTGCAGGCGGTGGTCCAGTAATAGCATTGCCATTTTGGGCAATTAACTCGGGGNGGTCTTCCCTATCTCATTCTGTTTTTCTTTATCCCTCCCTACTTCTGTTCACTGCTCGCTACTTCCCATACGTATCAGAATTGTGGGAGACGCTGGGCTGCAGAATGGTAAATTTCTTACCCGATAATTTCCTTTCTGCTAGCAGCGTCTCCCACAATTCTACCCTCCCTGGNTGGCTTCCTAGCCAAGGGACAATATTTAATTTTGATAGTTACGTTTGTAGGCCATAGCCTACTGTACATAGTTTACTGGTTGGCATTGAAGTTATTGTTACTAATCATATTCTACGAGTTTTTACACAGCTTTGGAATGAATCATCTGGCAGCAGGCCGGAGAAGGGGGCGTGGCTAGCACGGGCTGTGCTACAGCTTTGAACCGCCTCTGGAACTGCACAGACGGGGGGGAATAGCCCATACGTATCAGAATTGTGGGAGATGCTGCTAGCAGAAAGGAAATTATCGGGTAAGAAATTTCCATTCT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| DIRS-1a_Amnio | ELK1 | 1589 | 1597 | - | 17.02 | ACCGGAAGT |
| DIRS-1a_Amnio | ETV5 | 1589 | 1597 | - | 17.00 | ACCGGAAGT |
| DIRS-1a_Amnio | ELK1::HOXA1 | 1584 | 1597 | - | 16.94 | ACCGGAAGTCAGGA |
| DIRS-1a_Amnio | ZNF281 | 797 | 806 | - | 16.91 | GGGGGATGGG |
| DIRS-1a_Amnio | ELK3 | 1589 | 1597 | - | 16.80 | ACCGGAAGT |
| DIRS-1a_Amnio | Ets98B | 294 | 302 | + | 16.79 | ACCCGGATC |
| DIRS-1a_Amnio | ZNF213 | 803 | 814 | + | 16.75 | CCCCAGGCAGGG |
| DIRS-1a_Amnio | AGL15 | 4968 | 4983 | + | 16.73 | TTGCCATTTTGGGCAA |
| DIRS-1a_Amnio | SREBF2 | 2960 | 2969 | - | 16.67 | ATGGGGTGAT |
| DIRS-1a_Amnio | KLF5 | 2168 | 2177 | + | 16.67 | GCCCCACCCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
