Chompy-6_Croc
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001323 |
|---|---|
| TE superfamily | Harbinger |
| TE class | DNA |
| Species | Amniota |
| Length | 980 |
| Kimura value | 28.75 |
| Tau index | 0.0000 |
| Description | Chompy-6 DNA transposon, PIF-Harbinger subfamily |
| Comment | - |
| Sequence |
CGCTATAGGCTATTCTGGGGTGGGGGGCGCTCTCCACCCCTCCTGTTGAAGCTGTNCCACTNTGCANAAAAGAATTNAAGATTCATTGGGCCAGAGAGAGGGAGCAAGAGNGAGCATGACTCTGTAGCCTAGTGGTTAGGGCACTCACCTGGGAGGGGGGAGNCCTGGGTTCCGGTCCCTGCTCCAAGGACTGTTTATGTATTTTATCCAATGACCGTTTAATGTAAAATACATAAACAGTCCTTGGAGCAGGGACCGGAACCCAGGNCTCCCCCCTCCCAGGTGAGTGCCCTAACCACTAGGCTACAGAGTCATGCTCNCTCTTGCTCTCTCTCTCTGGCCCAATGAATCTTGAATTCTTTTCTGCANAGTGGNACAGCTTCAACAGGAGGGGTGGAGAGTGCCCCCACCCCAGAATAGCCTATAGCCTGGTGGTTAGGGCACTCTCCTGGGAGGTGGGAGATGTGGGTTTGAATCCCCTCAGGCNGAGGAGGGAATTGAACCCGGGTCTCCCACNTCCTGGGCGAGTGCTCTAACCACTAGGCTATTGNATAAAAGGGGGGCGGCACCACCACCTCCTCCGGCCGCGTTTTAAAAGAAAAGAGTGANCCCTGCTCCGTTTTTGAAAGAAAGGGCTTAGGCGCCTANCTCCAGGAGAGGGTTCCGGGCTGTGAATCCCGAGTGGACGGAGGCGCCTCCCTGCAGCCCTGAGTNAGGCGCCTAAGCCCCGGAGAGGGGCGGGATTTAAGACACACCCCTGTCCTCAGCGTTTCCTATTGGCTAGCTTAGGCGGCTCCCCGCTCAGCGTGCTGGCTNTTGTGGATCCCATTCTGAGGCGCCTAACTCTCCCCATGCACTGTATAGGGAGCCTAGGCGCCTAACTCAGGGCTNTGGATTCCACTCCGGGGGCCAGGCGCCTAAAAGTTAGGCGCTGCAACGCTCAGCGTTGCGGCGCCTAAGTCCCTTTGTGGATCTAGCCC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Chompy-6_Croc | Trl | 327 | 335 | - | 14.81 | GAGAGAGAG |
| Chompy-6_Croc | Trl | 329 | 337 | - | 14.81 | GAGAGAGAG |
| Chompy-6_Croc | KLF5 | 17 | 26 | - | 14.78 | CCCCCACCCC |
| Chompy-6_Croc | KLF5 | 404 | 413 | + | 14.78 | CCCCCACCCC |
| Chompy-6_Croc | KLF1 | 18 | 25 | + | 14.64 | GGGTGGGG |
| Chompy-6_Croc | KLF1 | 405 | 412 | - | 14.64 | GGGTGGGG |
| Chompy-6_Croc | Gsx | 211 | 230 | + | 14.63 | ATGACCGTTTAATGTAAAAT |
| Chompy-6_Croc | ERF9 | 564 | 582 | - | 14.62 | GGAGGAGGTGGTGGTGCCG |
| Chompy-6_Croc | MYB73 | 212 | 219 | - | 14.60 | AACGGTCA |
| Chompy-6_Croc | DREB2G | 572 | 585 | - | 14.58 | GCCGGAGGAGGTGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
