Charlie24
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000101 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Theria_mammals |
| Length | 2449 |
| Kimura value | 31.14 |
| Tau index | 0.0000 |
| Description | hAT-Charlie DNA transposon, Charlie24 subfamily |
| Comment | 14-16bp TIRs. ORF (roughly 354-2162) encodes a transposase closest to Charlie11 transposase (>50% identical, >67% similar). |
| Sequence |
AGATGTTTTTAAACTGNAGTCCATAGACAGGNCTTTAGGGGGTCCGTGAACCGGACACAAAAATATTTTTTTCTTTNATTTCTTTCCTGTTACTTTGAAAATTGTCTTTGTGAAAAAATTATTTTTATGTCAAATTATGTTATTAAGGTATTGTTTCACTCCAAACAAGTGTAGGGTGGCATGGGATGCTACTGTACATGGTCAGGTAATGTACAATTATCATCGTTACCATGTTATGACGTCTAGAATAGTTTCCCATTGATAGGAATTAAAGAAAACGTACCCTGCCATTATGATTATGGACATCTGTCTTTGTTTACATCGGGCCTAGCTTAAGTTGGAAAATGTCAAAGAAAAGAAAGTATAATGAAGCTTACGTATCCTTTGGTTTTACTTTCATCGCCGAACGTGATGGGACACAAAAGCCACGGTGCTTCTTGTGTGGCAAGGTTCTTGCCAATGGAAGCACGAAGCCAACAAAGCTGAAGGAGCACCTTATATCTGTCCATCCTGAAAATACATCAGACAGTGTGGATCTTTTTCGTGAGAAGAAGGCTCGATTTGAAAAGGCTGGAACTTTACCAAAACTTGGATTTGCCCCAACACAAAAGCCTTGTCTTGAAGCATCCTACAAGGTTGCTTATCGCATTGCCAAGCAAAAGAAGCCACACACAATTGGAGAGACCTTGGTGAAGCCATGTGCCCTGGAAATGGTCGAGCTGGTTTGTGGCTTGGAGCAGAGGAAGAAAATTGAAGCAGTGCCTCTGTCAAATGACGTCATCCACTCCAGAATCGCTGACATTTCTTCTAATATTTTGAAGCAGGTCATGGAGGAATTGGCAGCTATGCCATTTCCCTTCAGCATGCAACTGGATGAAACTACTGACGTCTCTCAGTGCAGCCAGCTCCTGGTTTTCGTCCGTTATGTGCACGCTGACGCCATCAAAGAAGAATTCCTATTTTGTGAGCCCCTTTTGGAAACTNCAAAGGCCGTCGACATCTTCGAAATGGTGAAAAGTTTCTTTGCCAAGCAAAACTTCGACTGGAAGAAAAATCTTGGTACTCTGTGCACAGATGGAGCACCTGCGATGCTTGGCAACACATCTGGTTTTGCTGCTTTGGTGAAGAAAGAAGCTCCACACGTCATCGTGACTCGTTGCTTTCTACATCGGCATGCATTGGCGTCAAAGACTCTGCCAACAATCCTGAAAGAAGTCTTGTCTACTGCCGTGAAAGTCGTCAACTTCATCAGAGCCAGGGCCTTGAATCACCGCCTTTTCAAGAGGTTTTGTCAAGAAATGGGAGCAGAATATGAAGTTCTTCTCTACTACACAGAAGTTCGCTGGCTTTCCAGAGGACAAGTCTTGAAGCGCTTGATTGAACTTCGGGCAGAAGTTTCACTTTTTTTGAGAGAAAAGGAAAGCCCACTCTCAGAACAATTTGACAGGGAGGAGTTCATTCATGGCTTGGCTTACTTGGCGGATATTTTTGGCCATATGAATGAGGTAAATCTTTCGATTCAAGGCCCTGCAGTCACCATTATGGATGCTGCTGAAAAACTACGAGCTCTTTTGGCCAAGCTGCCACTCTGGAAGAGGAGATTGGAGGCAGACAACTATGCGAACTTTCCAATGCTGGAGGAAGTGCTTCTGCAGGCTGGAGTCGAGAGTGACAAAGCCTTGTCAATTTCTCTGCAGGCAGAAATCTGCAGACACCTGGAAACACTGCAGAACTCTTTTGAAGGTTACTTCTGCTCAGACGACCTTAAAATTGAAACGTGGATTCGTAATCCTTTCCTTGCTGACATAGACAGCATCAATGATGCAGACCTTGCCAAAGATGACCTCATTGACTTGAGGACAAAGGAAATGATGCGACATGAATTCAACTCGAAGAGTCTTGGAGAATTCTGGTGTTCCTTGACACAAGCCTACCCTCATCTGGCAAAGCGAGCTATGGGAGCTCTGATTCCGTTTGCTACTACATACCTTTGTGAGTCAGGGTTTTCAGCACTTGTTGCCATCAAAACGAAAAGTCAAAATCGATTGGATGTCAAAGATGACATGCACGTTGCCATGTCAAAGACCACTCCACAATTTCAANCTTCATTCAAGCCAAACAACAGCAGCCTTCTCATTGAAATTTACTTTTGAGCAGAATTAAAGTTTACTTTTGTTTTATTTGCACAATTTGGATTTATTTCNATTTTTTTCAGGAAGTGGCCATTAATTTTTGCATGAAAAATGAGAGTGAGAGACATAATTCTTTGTAAAGATTGTTTTTATATTCTGTCTATGTGAAGGAAATNAATTTCCAATGCAATAAAATAAATTGTATGCAAAATATTTGTGTGTATGTGTNTATGTGCATTTTTTTCTGGGGAGAGAGTCCATAGCTTTCATCAGATTCTCAAAGGGGTCCGTGACCCAAAAAAGGTTAAGAACCACTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie24 | Creb1 | 772 | 781 | - | 17.43 | ATGACGTCAT |
| Charlie24 | JUND | 772 | 782 | - | 17.38 | GATGACGTCAT |
| Charlie24 | FOSL2::JUNB | 772 | 781 | + | 17.28 | ATGACGTCAT |
| Charlie24 | FOSL2::JUNB | 772 | 781 | - | 17.28 | ATGACGTCAT |
| Charlie24 | ZNF680 | 944 | 954 | + | 17.27 | CAAAGAAGAAT |
| Charlie24 | TGA7 | 772 | 781 | + | 17.23 | ATGACGTCAT |
| Charlie24 | TGA7 | 772 | 781 | - | 17.23 | ATGACGTCAT |
| Charlie24 | TGA6 | 772 | 781 | + | 17.14 | ATGACGTCAT |
| Charlie24 | TGA6 | 772 | 781 | - | 17.14 | ATGACGTCAT |
| Charlie24 | tll | 2031 | 2040 | + | 17.07 | AAAAGTCAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
