Charlie18a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000095 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 342 |
| Kimura value | 28.38 |
| Tau index | 0.8627 |
| Description | hAT-Charlie DNA transposon, Charlie18a subfamily (non-autonomous) |
| Comment | - |
| Sequence |
CAGTGGTTCCCAAATGCCGGTCCGCGGACCAGTGCCGGTCCGTGACGAAGTTTTCACCGGTCCGCGGCGAAATGAGAAAAATAAGGACAATGTAGTGAGTTTTTCATAAAGCTAAATTTATTCAATTTAAAGGACTGTCCTTTATTCTGAGATTATGTCCTTCCTACTTTTTTGGTGTTAAAATGTCTTTCTTTTATGAAATGATGGTGATAGTAGATGGTAGTTGTTGTTTTTTTAATGTCCTTACTTGGCAAAATAAAAAGTTGGCAACCCTATGTCGGTCCCCAAATTTTTTTTTGAAATTTTACTGGTCCGTGAAATCCAAAAGTCTGGGAACCACTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie18a | DOF5.8 | 154 | 172 | + | 13.98 | TATGTCCTTCCTACTTTTT |
| Charlie18a | DREB1D | 275 | 282 | + | 13.82 | ATGTCGGT |
| Charlie18a | MYB96 | 218 | 228 | - | 13.62 | AACAACTACCA |
| Charlie18a | Aef1 | 222 | 229 | - | 13.61 | CAACAACT |
| Charlie18a | ZNF384 | 290 | 297 | - | 13.57 | AAAAAAAA |
| Charlie18a | ZNF384 | 291 | 298 | - | 13.57 | AAAAAAAA |
| Charlie18a | DOF3.4 | 156 | 172 | + | 13.53 | TGTCCTTCCTACTTTTT |
| Charlie18a | ARF1 | 276 | 282 | - | 13.49 | ACCGACA |
| Charlie18a | ttk | 83 | 91 | + | 13.49 | AAGGACAAT |
| Charlie18a | DREB1E | 275 | 282 | + | 13.39 | ATGTCGGT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
