Charlie10a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000082 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 280 |
| Kimura value | 23.06 |
| Tau index | 1.0000 |
| Description | hAT-Charlie DNA transposon, Charlie10a subfamily (non-autonomous) |
| Comment | - |
| Sequence |
CAGTGCTACTCAAAGTGTGGCCCATGGACCGGTGCCAGTCCGCGAACTGTTTGTTACCGGTCCGCGACGAGATAAGGAGCTTGCGCCAGAATGTAAATCAACGCACTGCTTCCTTCATCGAGAAAGTCTTGCTACGAAAAAAATGTCAGCTGAACTAAACAGTGTGCTTAGTGACGTAGTTGATTTACATTCTGGCGCAAGCTCCTTATCTCGTCGCGGACCGGTAACAAACAGTTCGCGGACCGGCACTGGTCCGCGGACCACACTTTGAGTAGCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie10a | YPR015C | 180 | 190 | - | 12.59 | ATGTAAATCAA |
| Charlie10a | YPR015C | 91 | 101 | + | 12.59 | ATGTAAATCAA |
| Charlie10a | Zm00001d044785 | 204 | 210 | + | 12.54 | CCTTATC |
| Charlie10a | Zm00001d044785 | 71 | 77 | - | 12.54 | CCTTATC |
| Charlie10a | Zm00001d038683 | 257 | 264 | - | 12.47 | GTGGTCCG |
| Charlie10a | NR4A1 | 141 | 148 | + | 12.32 | AAATGTCA |
| Charlie10a | Foxq1 | 154 | 163 | - | 12.30 | ACTGTTTAGT |
| Charlie10a | GATA5 | 204 | 211 | - | 12.27 | AGATAAGG |
| Charlie10a | GATA5 | 70 | 77 | + | 12.27 | AGATAAGG |
| Charlie10a | NR4A2 | 141 | 148 | + | 12.21 | AAATGTCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
