CR1-11_Crp
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001328 |
|---|---|
| TE superfamily | CR1 |
| TE class | LINE |
| Species | Amniota |
| Length | 1461 |
| Kimura value | 40.81 |
| Tau index | 0.0000 |
| Description | CR1 (Chicken Repeat 1) retrotransposon, CR1-11_Crp subfamily |
| Comment | - |
| Sequence |
CCCAGAATTCTGAAAGAACTGGCACATGAAATCGCAGGTCCGGTAGCAAGGATTTTTAATAAATCTATCAAGTCAGAGGGTGGTACCATATGACTGGAGAAAGCAAACTTAGATGTGGAAAAAAGTGATCCGGGCAACTACAGGCCCGTTAGTCTGACCTCAATAGTATGCAAGGCTTTAGAACAAATTTTGAAGGAAAGAATAATTAAAGACATGGAGGTAAATGGAAAATGGGATAAAATGCAACATGGGTTTACCAAAGGTAGATCGTGCCAGACTAACCTGATACTTTCTTTGATAAGATAACTGATTTTCTAGACAAAGNAGAAATGCGGTAGATCTNATCTATCTGGACTTCAGTAAAGCATTTGATACGGTGCCACATGGGAAATATTAGTTAAGCTGGAGAAGATGGGGATTAGTACAAGAATTGTAAGGTGGTAAGGAGCTAAGGGAGATGACAACGGGTNGTGCTGAAAGGGAANTATCGGCTGGAGGAGGTTACTAGTGGAGTTCTCAAGGATCGGTCTTGGGACCGATCTTATTTAATATTTTCATTAATGACCTTGGCACAAAAGTAGGAGTGTGCTAATGAAATTTGCTGATGACACAAAGTTGGGAGGCATCGTCAATACAGAGGAGGATCGGGATATCATACAGGAAGAACTGGATGACCTTGAGACTGGAGTAATAGAAATGGGATGAAATTCAATAGTACAAAGTGCAAGGTCATGCACTTAGGGACTAATAAGAATTTCTGCTATAAGCTGGGAGCTCATCAGTTGGAAACGNCGGAGAAAGACCTGGGTGTACTAGTCGATCACAGGATGACTATGAGCCACCAATGTGATGCGGCCGTGAAAAAGGCAAATGCGATCCTAGGATGCATNAGAAGGTATTTCCAGTAGAGATAGGGAAGTATTAATGCCATTGTACAAGGACTGGTGAGACCTCATCTGGAATACTGTGTACAGTTCTGGTCACCCATGTTCAAGAAAGATGAATTCAAACTGGAACAGGTGCAGAGAAGGGCTACTAGGATGATCAGGGGAATGGAGAGCCTATCTTACGAGAGGAGACTAAAAGAGCTTGGCTTGTTTAGCCTAGCAAAACGAAGGCTGAGAGGGGATATGATTGCTNTCTATAAATACATCAGGGGGGTAAACACCAGGGAGGGAGAAGAGCTATTTAAGCTAAAGGACAATGTTGGCACAAGAACAAATGGGTATAAACTGGCCATGAATAAATTTAGGCTGGAAATTAGAAGAAGGTTTCTAACCATCAGAGCAGTGAGGTTCTGGAACAGCCTTCCAATAGGAGTAGTGGGGGCAAAAAACCTAACTAGTTTTAAGATGGAGCTTGATCAGTTTATGAAAGGGATTATATGACGTGGTTGCCTGCGATAGCAGGGGACTGATNAATGACCCAGGAGGTCCCTTCCAGTCCTATGTTCCTATGTTC
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| CR1-11_Crp | NR1H2::RXRA | 718 | 734 | + | -5.16 | CAAAGTGCAAGGTCATG |
| CR1-11_Crp | Sox21b | 921 | 935 | - | -9.56 | TACAATGGCATTAAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
