CR1-11_Crp
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001328 |
|---|---|
| TE superfamily | CR1 |
| TE class | LINE |
| Species | Amniota |
| Length | 1461 |
| Kimura value | 40.81 |
| Tau index | 0.0000 |
| Description | CR1 (Chicken Repeat 1) retrotransposon, CR1-11_Crp subfamily |
| Comment | - |
| Sequence |
CCCAGAATTCTGAAAGAACTGGCACATGAAATCGCAGGTCCGGTAGCAAGGATTTTTAATAAATCTATCAAGTCAGAGGGTGGTACCATATGACTGGAGAAAGCAAACTTAGATGTGGAAAAAAGTGATCCGGGCAACTACAGGCCCGTTAGTCTGACCTCAATAGTATGCAAGGCTTTAGAACAAATTTTGAAGGAAAGAATAATTAAAGACATGGAGGTAAATGGAAAATGGGATAAAATGCAACATGGGTTTACCAAAGGTAGATCGTGCCAGACTAACCTGATACTTTCTTTGATAAGATAACTGATTTTCTAGACAAAGNAGAAATGCGGTAGATCTNATCTATCTGGACTTCAGTAAAGCATTTGATACGGTGCCACATGGGAAATATTAGTTAAGCTGGAGAAGATGGGGATTAGTACAAGAATTGTAAGGTGGTAAGGAGCTAAGGGAGATGACAACGGGTNGTGCTGAAAGGGAANTATCGGCTGGAGGAGGTTACTAGTGGAGTTCTCAAGGATCGGTCTTGGGACCGATCTTATTTAATATTTTCATTAATGACCTTGGCACAAAAGTAGGAGTGTGCTAATGAAATTTGCTGATGACACAAAGTTGGGAGGCATCGTCAATACAGAGGAGGATCGGGATATCATACAGGAAGAACTGGATGACCTTGAGACTGGAGTAATAGAAATGGGATGAAATTCAATAGTACAAAGTGCAAGGTCATGCACTTAGGGACTAATAAGAATTTCTGCTATAAGCTGGGAGCTCATCAGTTGGAAACGNCGGAGAAAGACCTGGGTGTACTAGTCGATCACAGGATGACTATGAGCCACCAATGTGATGCGGCCGTGAAAAAGGCAAATGCGATCCTAGGATGCATNAGAAGGTATTTCCAGTAGAGATAGGGAAGTATTAATGCCATTGTACAAGGACTGGTGAGACCTCATCTGGAATACTGTGTACAGTTCTGGTCACCCATGTTCAAGAAAGATGAATTCAAACTGGAACAGGTGCAGAGAAGGGCTACTAGGATGATCAGGGGAATGGAGAGCCTATCTTACGAGAGGAGACTAAAAGAGCTTGGCTTGTTTAGCCTAGCAAAACGAAGGCTGAGAGGGGATATGATTGCTNTCTATAAATACATCAGGGGGGTAAACACCAGGGAGGGAGAAGAGCTATTTAAGCTAAAGGACAATGTTGGCACAAGAACAAATGGGTATAAACTGGCCATGAATAAATTTAGGCTGGAAATTAGAAGAAGGTTTCTAACCATCAGAGCAGTGAGGTTCTGGAACAGCCTTCCAATAGGAGTAGTGGGGGCAAAAAACCTAACTAGTTTTAAGATGGAGCTTGATCAGTTTATGAAAGGGATTATATGACGTGGTTGCCTGCGATAGCAGGGGACTGATNAATGACCCAGGAGGTCCCTTCCAGTCCTATGTTCCTATGTTC
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| CR1-11_Crp | ERR | 672 | 679 | - | 14.77 | CAAGGTCA |
| CR1-11_Crp | ERR | 725 | 732 | + | 14.77 | CAAGGTCA |
| CR1-11_Crp | MYOD1 | 1015 | 1023 | - | 14.68 | GCACCTGTT |
| CR1-11_Crp | Atf-2 | 1384 | 1394 | + | 14.67 | TATGACGTGGT |
| CR1-11_Crp | ftz-f1 | 673 | 680 | + | 14.63 | GACCTTGA |
| CR1-11_Crp | MZF1 | 413 | 420 | - | 14.60 | AATCCCCA |
| CR1-11_Crp | ZNF189 | 1300 | 1308 | - | 14.56 | GGCTGTTCC |
| CR1-11_Crp | ZNF341 | 1301 | 1308 | + | 14.55 | GAACAGCC |
| CR1-11_Crp | RXRB | 726 | 739 | - | 14.52 | AAGTGCATGACCTT |
| CR1-11_Crp | elt-3 | 296 | 303 | - | 14.52 | TCTTATCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
