BC200
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000073 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Primates |
| Length | 145 |
| Kimura value | 10.40 |
| Tau index | 1.0000 |
| Description | Alu-related SINE/putative ncRNA gene |
| Comment | 5' end derives from Alu, middle is A-rich, 3' region unique to BC200. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTTAGGGAGGCNNAGAGGCGGGAGGATAGCTTGAGCCCAGGAGTTCGAGACCTGCCTGGGCAATATAGCGAGACCCCGTTCTCCACAAAAAGGAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| BC200 | DOF3.4 | 124 | 140 | - | 14.18 | TTTTTTTTTTTCCTTTT |
| BC200 | SVP | 117 | 132 | + | 14.01 | CTCCACAAAAAGGAAA |
| BC200 | ZNF263 | 56 | 62 | + | 13.83 | GGGAGGA |
| BC200 | DOF3.6 | 119 | 139 | - | 13.70 | TTTTTTTTTTCCTTTTTGTGG |
| BC200 | ZNF384 | 130 | 137 | + | 13.57 | AAAAAAAA |
| BC200 | ZNF384 | 131 | 138 | + | 13.57 | AAAAAAAA |
| BC200 | ZNF384 | 132 | 139 | + | 13.57 | AAAAAAAA |
| BC200 | ZNF384 | 133 | 140 | + | 13.57 | AAAAAAAA |
| BC200 | ZNF384 | 134 | 141 | + | 13.57 | AAAAAAAA |
| BC200 | ZNF384 | 135 | 142 | + | 13.57 | AAAAAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
