AluYk4
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000066 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Hominoidea |
| Length | 311 |
| Kimura value | 4.81 |
| Tau index | 0.9385 |
| Description | AluYk4 subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. Identical to AluYb3a2. Renamed from AluYb3a2 for nomenclature consistency. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATAGCGCCACTGCAGTCCGGCCTGGGCGAAAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYk4 | DOF5.1 | 293 | 311 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYk4 | DOF3.6 | 279 | 299 | - | 15.64 | TTTTTTTTTTTTTTTTTTGAG |
| AluYk4 | ZNF135 | 69 | 82 | - | 14.93 | TCTCGATCTCCTGA |
| AluYk4 | Spps | 208 | 218 | - | 14.75 | GCTCCGCCTCC |
| AluYk4 | ZNF257 | 183 | 192 | + | 14.53 | GAGGCAGGAG |
| AluYk4 | KLF3 | 139 | 148 | - | 14.43 | CACCGCGCCC |
| AluYk4 | KLF3 | 5 | 14 | - | 14.43 | CACCGCGCCC |
| AluYk4 | EREB71 | 139 | 148 | - | 14.22 | CACCGCGCCC |
| AluYk4 | EREB71 | 5 | 14 | - | 14.22 | CACCGCGCCC |
| AluYk4 | ZNF770 | 42 | 49 | - | 13.95 | CGGCCTCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
