AluYk3
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001145 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Hominoidea |
| Length | 311 |
| Kimura value | 3.89 |
| Tau index | 0.8260 |
| Description | AluYk3 subfamily |
| Comment | Assumed intermediate between AluY and AluYk4. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATAGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYk3 | DOF5.1 | 293 | 311 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYk3 | DOF3.6 | 279 | 299 | - | 15.64 | TTTTTTTTTTTTTTTTTTGAG |
| AluYk3 | luna | 139 | 147 | - | 15.26 | ACCACGCCC |
| AluYk3 | Klf3/8/12 | 139 | 147 | - | 15.24 | ACCACGCCC |
| AluYk3 | ZNF135 | 69 | 82 | - | 14.93 | TCTCGATCTCCTGA |
| AluYk3 | KLF3 | 139 | 148 | - | 14.83 | CACCACGCCC |
| AluYk3 | Spps | 208 | 218 | - | 14.75 | GCTCCGCCTCC |
| AluYk3 | ZNF257 | 183 | 192 | + | 14.53 | GAGGCAGGAG |
| AluYk3 | KLF3 | 5 | 14 | - | 14.43 | CACCGCGCCC |
| AluYk3 | CRF4 | 143 | 152 | - | 14.36 | CCGCCACCAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
