AluYk3
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001145 |
|---|---|
| TE superfamily | Alu |
| TE order | SINE |
| Species | Hominoidea |
| Length | 311 |
| Kimura value | 3.89 |
| Tau index | 0.8260 |
| Description | AluYk3 subfamily |
| Comment | Assumed intermediate between AluY and AluYk4. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATAGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYk3 | BPC1 | 281 | 304 | + | -2.03 | CAAAAAAAAAAAAAAAAAAAAAAA |
| AluYk3 | Rarb | 56 | 71 | + | -6.02 | GCGGATCACGAGGTCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
