AluYk12
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000065 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Homo_sapiens |
| Length | 311 |
| Kimura value | 6.28 |
| Tau index | 0.9922 |
| Description | AluYk12 subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYk12 | DOF3.6 | 279 | 299 | - | 15.64 | TTTTTTTTTTTTTTTTTTGAG |
| AluYk12 | luna | 139 | 147 | - | 15.26 | ACCACGCCC |
| AluYk12 | Klf3/8/12 | 139 | 147 | - | 15.24 | ACCACGCCC |
| AluYk12 | ZNF135 | 69 | 82 | - | 14.93 | TCTCGATCTCCTGA |
| AluYk12 | KLF3 | 139 | 148 | - | 14.83 | CACCACGCCC |
| AluYk12 | ZNF257 | 183 | 192 | + | 14.53 | GAGGCAGGAG |
| AluYk12 | KLF3 | 5 | 14 | - | 14.43 | CACCGCGCCC |
| AluYk12 | KLF2 | 139 | 146 | - | 14.29 | CCACGCCC |
| AluYk12 | EREB71 | 5 | 14 | - | 14.22 | CACCGCGCCC |
| AluYk12 | KLF1 | 139 | 146 | + | 14.18 | GGGCGTGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
